Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACLF6M_RS17380 Genome accession   NZ_CP177252
Coordinates   3595327..3595965 (+) Length   212 a.a.
NCBI ID   WP_412027834.1    Uniprot ID   -
Organism   Deinococcus yunweiensis strain KCTC 3955     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3590327..3600965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6M_RS17350 (ACLF6M_17350) gatC 3591079..3591369 (+) 291 WP_412027828.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  ACLF6M_RS17355 (ACLF6M_17355) serS 3591369..3592646 (+) 1278 WP_412027829.1 serine--tRNA ligase -
  ACLF6M_RS17360 (ACLF6M_17360) - 3592660..3593826 (-) 1167 WP_412027830.1 diguanylate cyclase domain-containing protein -
  ACLF6M_RS17365 (ACLF6M_17365) - 3593942..3594379 (+) 438 WP_412027831.1 hypothetical protein -
  ACLF6M_RS17370 (ACLF6M_17370) - 3594384..3594665 (-) 282 WP_412027832.1 hypothetical protein -
  ACLF6M_RS17375 (ACLF6M_17375) - 3594822..3595334 (+) 513 WP_412027833.1 hypothetical protein -
  ACLF6M_RS17380 (ACLF6M_17380) comF 3595327..3595965 (+) 639 WP_412027834.1 ComF family protein Machinery gene
  ACLF6M_RS17385 (ACLF6M_17385) - 3596119..3596520 (-) 402 WP_412027835.1 methylglyoxal synthase -
  ACLF6M_RS17390 (ACLF6M_17390) - 3596548..3597405 (-) 858 WP_412027836.1 DUF1206 domain-containing protein -
  ACLF6M_RS17395 (ACLF6M_17395) - 3597541..3598572 (+) 1032 WP_412027837.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  ACLF6M_RS17400 (ACLF6M_17400) - 3598585..3599052 (-) 468 WP_412027838.1 DUF6924 domain-containing protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 22433.94 Da        Isoelectric Point: 10.7572

>NTDB_id=1086489 ACLF6M_RS17380 WP_412027834.1 3595327..3595965(+) (comF) [Deinococcus yunweiensis strain KCTC 3955]
MADPAATLGGWLRRLLPQPCPGCGAQLGAERGLCPVCRAGLRPRVDSHSPLRDRAQPHLISLGEYRGVHRRAVRALKFGG
ARDLADVLGEALADGVPHAWDVRAVVPVPLHASRQRQRGFNQAALLGHALAARLGVPCVDALIRTRATGQQARRHAAQRD
HMDGAFALRGVLPPGAVLLVDDVLTTGSTLKACQEVMLASGVSEVYAAAVAR

Nucleotide


Download         Length: 639 bp        

>NTDB_id=1086489 ACLF6M_RS17380 WP_412027834.1 3595327..3595965(+) (comF) [Deinococcus yunweiensis strain KCTC 3955]
GTGGCTGACCCGGCGGCCACGCTGGGAGGCTGGCTGCGCCGCCTGCTGCCCCAGCCCTGCCCCGGCTGCGGGGCACAGCT
GGGTGCCGAACGGGGGCTGTGCCCGGTGTGCCGTGCGGGACTGCGTCCCCGCGTGGACAGTCACAGTCCCCTACGTGACC
GGGCGCAGCCGCACCTGATCAGCCTGGGCGAGTACCGGGGCGTGCACCGCCGCGCCGTGCGAGCCCTGAAGTTCGGCGGG
GCGCGGGATCTGGCGGACGTGCTGGGCGAGGCCCTGGCGGACGGCGTCCCGCATGCCTGGGACGTGCGTGCCGTGGTGCC
CGTGCCGCTGCACGCCTCGCGCCAGCGGCAGCGCGGCTTCAACCAGGCGGCGCTGCTGGGGCATGCCCTGGCCGCGCGGC
TGGGGGTGCCCTGCGTGGACGCCCTGATCCGCACCCGCGCCACGGGGCAGCAGGCGAGGCGGCATGCCGCGCAGCGGGAT
CACATGGACGGTGCGTTTGCACTGCGCGGCGTGCTTCCGCCAGGCGCAGTGCTGCTCGTCGATGATGTTCTGACTACTGG
ATCCACGTTGAAGGCCTGCCAGGAGGTCATGCTGGCATCAGGCGTGTCTGAGGTCTACGCCGCCGCCGTTGCCCGCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(124-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.356

95.283

0.613
  comF Vibrio cholerae strain A1552

33.051

100

0.368

Multiple sequence alignment