Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   ACLF6M_RS11325 Genome accession   NZ_CP177252
Coordinates   2355543..2356100 (+) Length   185 a.a.
NCBI ID   WP_412026718.1    Uniprot ID   -
Organism   Deinococcus yunweiensis strain KCTC 3955     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2350543..2361100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6M_RS11300 (ACLF6M_11300) - 2350577..2351482 (+) 906 WP_412026713.1 carbohydrate ABC transporter permease -
  ACLF6M_RS11305 (ACLF6M_11305) - 2351484..2352359 (+) 876 WP_412026714.1 carbohydrate ABC transporter permease -
  ACLF6M_RS11310 (ACLF6M_11310) - 2352481..2353566 (+) 1086 WP_412026715.1 LacI family DNA-binding transcriptional regulator -
  ACLF6M_RS11315 (ACLF6M_11315) menC 2353571..2354680 (+) 1110 WP_412026716.1 o-succinylbenzoate synthase -
  ACLF6M_RS11320 (ACLF6M_11320) - 2354677..2355474 (+) 798 WP_412026717.1 acyl-CoA acyltransferase -
  ACLF6M_RS11325 (ACLF6M_11325) ddrB 2355543..2356100 (+) 558 WP_412026718.1 single-stranded DNA-binding protein Machinery gene
  ACLF6M_RS11330 (ACLF6M_11330) - 2356161..2356580 (-) 420 WP_412026719.1 hypothetical protein -
  ACLF6M_RS11335 (ACLF6M_11335) - 2356901..2357569 (-) 669 WP_412026720.1 metallophosphoesterase -
  ACLF6M_RS11340 (ACLF6M_11340) - 2357699..2358277 (+) 579 WP_412026721.1 GNAT family N-acetyltransferase -
  ACLF6M_RS11345 (ACLF6M_11345) rocF 2358392..2359297 (+) 906 WP_412026722.1 arginase -
  ACLF6M_RS11350 (ACLF6M_11350) - 2359491..2360060 (-) 570 WP_412026723.1 DinB family protein -
  ACLF6M_RS11355 (ACLF6M_11355) - 2360057..2361088 (-) 1032 WP_412026724.1 tRNA dihydrouridine synthase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20511.94 Da        Isoelectric Point: 6.9935

>NTDB_id=1086477 ACLF6M_RS11325 WP_412026718.1 2355543..2356100(+) (ddrB) [Deinococcus yunweiensis strain KCTC 3955]
MLHIEFLTDLGARVTVDVDSADKLLDIQRQYGRLGWTSGEVPTGGYQFPHDNEPDFDWTLIGARKWTSPDGEELVIHKGH
AYRRRELEAVDSRKMKLPAAVKYSRGAKSTDPEHLREKSDGEFEYVTLAIFRGGKRQERYAIPGGGRPTSAPQTARPAPT
RPAPGAATATLARPPVQATEDETPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1086477 ACLF6M_RS11325 WP_412026718.1 2355543..2356100(+) (ddrB) [Deinococcus yunweiensis strain KCTC 3955]
ATGTTACACATTGAGTTTCTGACGGATCTGGGGGCACGGGTCACGGTGGACGTGGACAGCGCCGACAAGCTGCTGGACAT
CCAGCGCCAGTACGGCCGCCTGGGCTGGACGAGCGGCGAGGTGCCCACCGGCGGCTACCAGTTCCCGCACGACAACGAAC
CCGACTTCGACTGGACGCTGATTGGCGCACGGAAGTGGACGAGCCCTGATGGCGAGGAACTCGTCATCCACAAGGGCCAT
GCCTACCGCCGCCGCGAACTGGAAGCCGTGGACAGCCGCAAGATGAAACTCCCGGCTGCCGTGAAGTACTCACGCGGCGC
GAAGAGCACCGATCCCGAGCACCTGCGCGAGAAGTCCGACGGCGAGTTCGAGTACGTCACCCTGGCGATCTTCCGGGGCG
GCAAGCGCCAGGAGCGCTACGCTATCCCCGGTGGCGGCCGTCCCACGTCGGCCCCCCAGACAGCCCGGCCCGCACCCACC
CGCCCGGCTCCGGGGGCCGCGACCGCCACCCTTGCCCGCCCCCCCGTGCAGGCGACCGAAGACGAGACGCCGTTCTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

69.634

100

0.719

Multiple sequence alignment