Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLF6M_RS06555 Genome accession   NZ_CP177252
Coordinates   1370938..1372158 (+) Length   406 a.a.
NCBI ID   WP_412029388.1    Uniprot ID   -
Organism   Deinococcus yunweiensis strain KCTC 3955     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1365938..1377158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6M_RS06535 (ACLF6M_06535) gatA 1367247..1368701 (-) 1455 WP_412029384.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  ACLF6M_RS06540 (ACLF6M_06540) - 1368772..1369533 (-) 762 WP_412029385.1 DUF4388 domain-containing protein -
  ACLF6M_RS06545 (ACLF6M_06545) scpB 1369692..1370219 (-) 528 WP_412029386.1 SMC-Scp complex subunit ScpB -
  ACLF6M_RS06550 (ACLF6M_06550) - 1370216..1370851 (-) 636 WP_412029387.1 L-threonylcarbamoyladenylate synthase -
  ACLF6M_RS06555 (ACLF6M_06555) pilC 1370938..1372158 (+) 1221 WP_412029388.1 type II secretion system F family protein Machinery gene
  ACLF6M_RS06560 (ACLF6M_06560) - 1372239..1372637 (-) 399 WP_412029389.1 Mov34/MPN/PAD-1 family protein -
  ACLF6M_RS06565 (ACLF6M_06565) - 1372741..1375956 (+) 3216 WP_412029390.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44580.53 Da        Isoelectric Point: 9.4665

>NTDB_id=1086475 ACLF6M_RS06555 WP_412029388.1 1370938..1372158(+) (pilC) [Deinococcus yunweiensis strain KCTC 3955]
MPVFEYRVRDRSGKVLKSQMEADSLAQVRDALRAKNLMIVEIKPPKSGLNADVKIPFLSDRPPSLKQVAIFSKQMATLIN
AGVPLVQSLAILQRQMEHKGFQEIVKAIRTDVESGTPLSETLVKYPKLFNRLYVNLVRAGETSGTLDAVLERIADFQEKD
LALRGKIKSALTYPVIVLIFAVLITYFLLTTIVPQFAGILAQLNAPLPVITKVLMATSDFLKNGTLYMLAFAITVTFLYR
WYYSTPKGRRIIDDIKLRIPIFGNLLQKSAISSFARTFGLLITSGVNIIESLEITKGTANNAIVEESIENAKNVVMVGDQ
MSSSLATSKIFPPMVVSMVAIGEETGSLDSMLDKVGDFYDREVDEAVEGMTAAIEPIMIVFLGGIVGTIVAGMFLPMFSI
IGSLSK

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1086475 ACLF6M_RS06555 WP_412029388.1 1370938..1372158(+) (pilC) [Deinococcus yunweiensis strain KCTC 3955]
ATGCCCGTCTTCGAATACCGTGTGCGCGACCGCTCCGGGAAAGTGCTGAAATCCCAGATGGAGGCCGACTCGCTGGCTCA
GGTGCGTGACGCCCTGCGTGCGAAGAACCTCATGATCGTGGAAATCAAGCCGCCGAAGAGTGGCCTGAACGCCGACGTCA
AGATTCCCTTCCTGAGCGACCGGCCGCCGAGCCTGAAGCAGGTGGCAATCTTCAGCAAGCAGATGGCCACACTGATCAAC
GCGGGTGTGCCGCTGGTGCAGTCGCTGGCCATCCTCCAGCGCCAGATGGAACATAAGGGCTTCCAGGAGATCGTAAAGGC
CATCCGCACGGATGTCGAGAGTGGAACGCCGCTGAGCGAGACGCTGGTGAAATATCCAAAGCTCTTCAACCGCCTGTATG
TCAACCTCGTCCGGGCCGGCGAGACCAGCGGAACGCTGGATGCAGTGCTGGAACGCATCGCCGACTTCCAAGAGAAGGAT
CTCGCGCTGCGTGGCAAGATCAAGAGTGCCTTGACCTACCCGGTAATTGTGCTGATCTTCGCCGTTCTGATTACCTACTT
CCTGCTGACGACTATCGTACCACAGTTCGCCGGTATTTTAGCCCAACTAAACGCCCCACTACCAGTTATCACCAAGGTGT
TAATGGCAACATCCGACTTCCTGAAGAACGGCACTCTGTATATGCTCGCCTTTGCGATCACGGTGACCTTTCTGTACCGC
TGGTACTACTCGACTCCAAAGGGCCGCCGCATCATCGACGATATCAAGCTCCGCATTCCCATCTTCGGGAATCTGCTCCA
GAAGAGTGCCATCAGTTCCTTTGCCAGAACCTTCGGCCTGCTGATCACATCCGGTGTGAACATCATCGAGAGTCTGGAGA
TCACCAAGGGCACCGCGAACAACGCCATCGTTGAGGAGTCGATCGAGAATGCCAAGAACGTCGTCATGGTCGGTGACCAG
ATGAGCAGCAGCCTGGCGACCAGCAAGATCTTCCCGCCCATGGTGGTCAGCATGGTCGCCATCGGCGAGGAGACCGGCTC
CCTGGACTCCATGCTCGACAAGGTCGGCGACTTCTATGACCGCGAGGTCGACGAGGCCGTCGAGGGCATGACGGCCGCCA
TCGAGCCGATCATGATCGTGTTCCTGGGCGGCATCGTGGGCACCATCGTCGCGGGGATGTTCCTCCCGATGTTCAGCATC
ATCGGCAGCCTGAGCAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

58.867

100

0.589

Multiple sequence alignment