Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACKXGF_RS01795 Genome accession   NZ_CP177234
Coordinates   319672..320622 (-) Length   316 a.a.
NCBI ID   WP_411954608.1    Uniprot ID   -
Organism   Alkalibacillus sp. S2W     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314672..325622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKXGF_RS01770 (ACKXGF_01770) - 315871..316107 (+) 237 WP_411954603.1 hypothetical protein -
  ACKXGF_RS01775 (ACKXGF_01775) - 316192..317007 (-) 816 WP_411954604.1 MerR family transcriptional regulator -
  ACKXGF_RS01780 (ACKXGF_01780) - 317025..317957 (-) 933 WP_411954605.1 siderophore ABC transporter substrate-binding protein -
  ACKXGF_RS01785 (ACKXGF_01785) - 317980..318738 (-) 759 WP_411954606.1 ABC transporter ATP-binding protein -
  ACKXGF_RS01790 (ACKXGF_01790) - 318735..319679 (-) 945 WP_411954607.1 iron chelate uptake ABC transporter family permease subunit -
  ACKXGF_RS01795 (ACKXGF_01795) ceuB 319672..320622 (-) 951 WP_411954608.1 ABC transporter permease Machinery gene
  ACKXGF_RS01800 (ACKXGF_01800) - 320769..321512 (-) 744 WP_411954609.1 sulfite exporter TauE/SafE family protein -
  ACKXGF_RS01805 (ACKXGF_01805) trpA 321529..322323 (-) 795 WP_411954610.1 tryptophan synthase subunit alpha -
  ACKXGF_RS01810 (ACKXGF_01810) trpB 322334..323518 (-) 1185 WP_411954611.1 tryptophan synthase subunit beta -
  ACKXGF_RS01815 (ACKXGF_01815) - 323521..324141 (-) 621 WP_411954612.1 phosphoribosylanthranilate isomerase -
  ACKXGF_RS01820 (ACKXGF_01820) trpC 324138..324935 (-) 798 WP_411954613.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34556.45 Da        Isoelectric Point: 9.9738

>NTDB_id=1086301 ACKXGF_RS01795 WP_411954608.1 319672..320622(-) (ceuB) [Alkalibacillus sp. S2W]
MKQRYLLIVLVLLSVLSVFIGVTNLNIRDITSLTDQQQQILWQSRIPRLISIIIAGATMAVGGLIMQQLSRNKFVSPTTA
GTMDSARLGILVSLLVFTSASPMQQALTAMVFAVLGTMVFMKILDKIKFKDAIFIPLVGIMFGNIIGSITMFFAYQHDLI
QSMSSWLQGDFSMILAGRYELLYISIPLLAVAYGYANKFTIAGMGEDFSTNLGLNHKQVVNVGLIIVAISTSVVVLTVGL
IPFLGLIIPNIVSIYHGDHLRKNLPHTALLGALFVLACDILGRVIIYPYEIPIGLTVGVIGSGTFIYLLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1086301 ACKXGF_RS01795 WP_411954608.1 319672..320622(-) (ceuB) [Alkalibacillus sp. S2W]
ATGAAACAACGCTACTTACTCATTGTACTAGTTTTGTTATCCGTTCTTTCAGTCTTTATCGGCGTAACAAATCTAAACAT
TCGTGATATCACTAGCCTAACAGACCAACAACAGCAAATTCTTTGGCAAAGCCGGATCCCTCGGTTGATCAGTATTATTA
TTGCTGGTGCTACGATGGCTGTAGGTGGACTAATTATGCAACAACTAAGCCGAAACAAATTCGTTTCTCCTACTACAGCA
GGCACGATGGATTCTGCAAGGCTTGGTATTCTCGTTTCACTTTTAGTATTCACATCAGCCAGCCCTATGCAACAAGCACT
TACCGCCATGGTATTCGCCGTTCTGGGCACCATGGTGTTCATGAAAATACTCGATAAAATTAAATTCAAAGATGCTATTT
TCATTCCGCTTGTTGGGATTATGTTTGGTAATATCATCGGTTCTATTACGATGTTTTTCGCCTATCAACATGATCTAATT
CAAAGCATGTCATCATGGTTACAGGGCGACTTTTCTATGATATTAGCGGGACGTTATGAATTATTATACATAAGCATCCC
GCTTCTGGCAGTGGCTTATGGTTATGCGAATAAATTCACGATTGCTGGAATGGGTGAGGATTTCTCAACGAACTTAGGGT
TAAATCACAAACAAGTCGTGAACGTTGGTCTGATTATTGTGGCAATATCAACATCTGTTGTCGTTCTAACAGTCGGGCTT
ATCCCGTTTTTAGGATTGATTATTCCAAATATCGTATCGATTTATCATGGGGATCATTTACGCAAAAACTTGCCCCATAC
CGCCCTACTTGGTGCCTTATTTGTTCTAGCGTGTGACATTCTCGGTCGCGTCATCATTTACCCTTATGAAATTCCAATCG
GCTTGACTGTTGGCGTGATTGGTAGCGGTACATTTATCTATTTATTGTTAAGGAGAAAGGCATATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.633

99.051

0.541

Multiple sequence alignment