Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACKXGF_RS00595 Genome accession   NZ_CP177234
Coordinates   107525..108895 (+) Length   456 a.a.
NCBI ID   WP_411954437.1    Uniprot ID   -
Organism   Alkalibacillus sp. S2W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 102525..113895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKXGF_RS00575 (ACKXGF_00575) - 102872..103336 (+) 465 WP_411954433.1 CtsR family transcriptional regulator -
  ACKXGF_RS00580 (ACKXGF_00580) - 103351..103890 (+) 540 WP_411954434.1 UvrB/UvrC motif-containing protein -
  ACKXGF_RS00585 (ACKXGF_00585) - 103890..104957 (+) 1068 WP_411954435.1 protein arginine kinase -
  ACKXGF_RS00590 (ACKXGF_00590) clpC 104977..107439 (+) 2463 WP_411954436.1 ATP-dependent protease ATP-binding subunit ClpC -
  ACKXGF_RS00595 (ACKXGF_00595) radA 107525..108895 (+) 1371 WP_411954437.1 DNA repair protein RadA Machinery gene
  ACKXGF_RS00600 (ACKXGF_00600) - 109072..110163 (+) 1092 WP_411954438.1 PIN/TRAM domain-containing protein -
  ACKXGF_RS00605 (ACKXGF_00605) ispD 110285..110962 (+) 678 Protein_101 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACKXGF_RS00610 (ACKXGF_00610) ispF 110990..111469 (+) 480 WP_411955539.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACKXGF_RS00615 (ACKXGF_00615) gltX 111513..112973 (+) 1461 WP_411954439.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50131.25 Da        Isoelectric Point: 6.2460

>NTDB_id=1086300 ACKXGF_RS00595 WP_411954437.1 107525..108895(+) (radA) [Alkalibacillus sp. S2W]
MAKSKVIFFCQECGYESPKWMGKCPACHQWNTLVEEKVSKNADRHQVTGESSKQRKKPQSIKEVSSQEEERLSTQMEELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQLSSQVANNHMNVLYISGEESEKQTKLRSDRLDANEDHLYIMAETNLEYVID
AIDQMNPSFVVIDSIQTIFNDAVTSAPGSVSQVRECTSALMKVAKSKGISIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHTFRILRSVKNRFGSTHEMGIFEMKEEGLKEVSNPSEIFLEERSQGVAGSTVVASLEGTRPMLVEIQALISPTQFG
NSRRMATGLDHNRVPLLMAVLEKRAGLLLQNQDAYVKVAGGVKLDEPAIDLAVAISVSSSFRDQPTRPDDVFIGEVGLTG
EVRRVARIEQRVHEAHKLGFKRIILPSNNLGSFTPPEGIELVGVNSVQEALKAGLE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1086300 ACKXGF_RS00595 WP_411954437.1 107525..108895(+) (radA) [Alkalibacillus sp. S2W]
ATGGCTAAATCAAAAGTGATCTTTTTCTGTCAGGAATGTGGCTATGAATCACCGAAATGGATGGGGAAATGTCCAGCTTG
TCATCAATGGAATACATTAGTTGAGGAAAAGGTGTCAAAAAACGCTGATCGTCATCAAGTAACAGGAGAATCCTCTAAAC
AACGAAAGAAACCTCAATCGATTAAAGAAGTATCTTCACAAGAAGAGGAACGTTTATCCACGCAAATGGAAGAGTTAAAT
CGTGTGTTGGGTGGTGGCATTGTACCTGGTTCGCTTGTTCTCATCGGAGGTGACCCCGGTATAGGTAAGTCGACATTATT
ACTTCAGCTATCATCTCAAGTGGCGAACAATCATATGAATGTGTTGTACATCTCTGGTGAAGAATCGGAAAAACAAACGA
AACTACGATCTGACCGACTCGATGCGAATGAGGATCATTTATACATTATGGCGGAAACAAATTTAGAATATGTGATTGAT
GCCATTGATCAAATGAACCCATCATTTGTCGTCATCGATTCGATTCAGACGATCTTTAATGATGCGGTTACCTCAGCACC
AGGCTCTGTTTCCCAAGTCCGTGAATGTACGAGTGCCTTGATGAAAGTGGCAAAGTCGAAAGGAATCTCGATTTTCATCG
TGGGTCACGTGACAAAAGAAGGAGCGATTGCAGGGCCGCGCTTGTTAGAGCATATGGTTGATACGGTATTATATTTTGAA
GGGGAACGCCATCATACATTCCGAATCCTCCGCAGTGTTAAAAACCGTTTCGGAAGTACACATGAGATGGGCATTTTTGA
GATGAAAGAAGAAGGATTAAAAGAAGTCAGTAACCCATCGGAAATCTTTCTAGAAGAGCGATCACAAGGGGTAGCAGGTT
CAACAGTAGTCGCTTCATTAGAAGGGACTCGTCCGATGCTAGTGGAAATTCAAGCATTGATCTCCCCGACTCAATTTGGT
AACTCCCGCCGTATGGCAACAGGGCTAGATCATAATCGGGTCCCATTACTTATGGCTGTCTTAGAAAAACGAGCTGGGTT
ATTGTTACAAAACCAAGATGCTTACGTCAAAGTTGCTGGTGGCGTGAAATTAGATGAGCCTGCAATTGATTTAGCAGTTG
CTATTAGTGTCTCTTCAAGCTTCCGTGACCAGCCGACACGTCCAGATGATGTATTTATTGGTGAAGTCGGATTAACAGGT
GAGGTTAGACGGGTCGCTCGTATTGAACAACGCGTTCACGAAGCACATAAACTTGGATTTAAGCGCATTATTTTACCAAG
TAATAACTTAGGCAGTTTTACACCGCCAGAAGGAATTGAATTAGTCGGAGTCAATTCCGTACAAGAGGCTCTAAAAGCAG
GTTTGGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.711

100

0.717
  radA Streptococcus mitis NCTC 12261

61.538

99.781

0.614
  radA Streptococcus mitis SK321

61.538

99.781

0.614
  radA Streptococcus pneumoniae Rx1

61.319

99.781

0.612
  radA Streptococcus pneumoniae D39

61.319

99.781

0.612
  radA Streptococcus pneumoniae R6

61.319

99.781

0.612
  radA Streptococcus pneumoniae TIGR4

61.319

99.781

0.612

Multiple sequence alignment