Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACLCDV_RS00395 Genome accession   NZ_CP177226
Coordinates   81244..82629 (+) Length   461 a.a.
NCBI ID   WP_333575972.1    Uniprot ID   -
Organism   Sphingobacterium sp. Lzh-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 76244..87629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLCDV_RS00375 (ACLCDV_00375) xseB 76366..76596 (-) 231 WP_411972600.1 exodeoxyribonuclease VII small subunit -
  ACLCDV_RS00380 (ACLCDV_00380) xseA 76639..77925 (-) 1287 WP_411972601.1 exodeoxyribonuclease VII large subunit -
  ACLCDV_RS00385 (ACLCDV_00385) - 78121..79845 (+) 1725 WP_411972602.1 serine hydrolase domain-containing protein -
  ACLCDV_RS00390 (ACLCDV_00390) - 79842..81002 (+) 1161 WP_411972603.1 dipeptidase -
  ACLCDV_RS00395 (ACLCDV_00395) radA 81244..82629 (+) 1386 WP_333575972.1 DNA repair protein RadA Machinery gene
  ACLCDV_RS00400 (ACLCDV_00400) - 82781..83464 (-) 684 WP_333575970.1 TlpA disulfide reductase family protein -
  ACLCDV_RS00405 (ACLCDV_00405) - 83537..84685 (+) 1149 WP_411972604.1 methionine aminotransferase -
  ACLCDV_RS00410 (ACLCDV_00410) nagB 84827..86755 (+) 1929 WP_201669845.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50601.98 Da        Isoelectric Point: 6.7503

>NTDB_id=1086246 ACLCDV_RS00395 WP_333575972.1 81244..82629(+) (radA) [Sphingobacterium sp. Lzh-3]
MAKSKSAYFCQNCGYESPKWMGQCPSCKQWNSFVEEVVEKTSSKVPEWRSSTTGGSTKRANKAAIIHEIVYQDELRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQ
NIFKQIETVQPNVIVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDEPVSGVSIAAMLEGMRPMMIEVQALVSN
SAFGNAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVVVAIISSQQDIAIRSNLTFAGEV
GLSGEIRAVNRIEQRIQEAEKLGFDGIFISKFNTKGLDAKKYDIAIRPVAKLEDIFSALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1086246 ACLCDV_RS00395 WP_333575972.1 81244..82629(+) (radA) [Sphingobacterium sp. Lzh-3]
ATGGCAAAATCAAAATCAGCATACTTCTGTCAAAACTGTGGCTACGAGTCTCCCAAATGGATGGGACAATGCCCTTCTTG
TAAGCAATGGAATAGTTTTGTTGAGGAAGTCGTCGAAAAGACGAGCTCAAAAGTGCCCGAATGGCGCAGTTCTACCACAG
GTGGAAGCACGAAAAGAGCGAATAAAGCTGCAATCATCCACGAAATTGTCTATCAGGATGAATTACGGATATTGACTCCT
GATCAGGAATTTAACCGGGTTCTTGGTGGTGGTATCGTTCCGGGATCCTTGGTACTTATCGGAGGCGAACCCGGTATTGG
GAAATCTACGTTGATGTTACAGCTCGCTTTATCAATCCCCCAAGTCAAGACACTTTATATATCTGGGGAAGAAAGCGAAC
AGCAAATTAAGATGCGGGCCGAGCGATTGTCACAATCTTCTAAAGCAAATTGTTATATCCTTACCGAGACATCGACTCAA
AATATTTTCAAGCAGATTGAGACTGTACAGCCGAATGTCATTGTCATAGATTCTATACAGACTTTACATTCCGCACAAAT
TGAATCGGCGCCAGGGTCGGTTTCTCAGGTGCGCGAATGTACCGCAGAATTGCTGCGGTTTGCAAAGGAAACCAGTACAC
CAGTTTTTATTGTAGGGCATATTACCAAGGACGGATCTATTGCAGGGCCAAAGGTTTTAGAACATATGGTAGATACGGTG
CTTCAATTCGAAGGGGATCGTCATCATGTATACCGAATTTTACGGGCTGTAAAAAATCGCTTTGGATCTGCTTCAGAACT
CGGCATTTATGAAATGCAGGGGTCGGGGCTAAGGGAAGTGTCGAATCCTTCGGAGATTATGATTTCCCAGCGCGATGAAC
CTGTTAGTGGCGTTTCCATTGCGGCGATGCTCGAAGGAATGCGCCCTATGATGATTGAAGTACAGGCACTGGTGAGTAAC
TCGGCGTTTGGAAATGCCCAACGCTCTTCTACAGGTTACGATACGAAGCGATTAAATATGCTGTTGGCTGTTTTGGAGAA
ACGCTTTGGTTTTAGGTTAAGTGCACAGGATGTGTTTTTGAATATTGCCGGTGGGTTGCGTGTTGAAGATCCTGCGATCG
ATTTGGCTGTTGTTGTTGCAATTATTTCTTCACAACAAGATATCGCGATTCGATCCAATCTGACTTTTGCCGGTGAGGTT
GGTTTATCGGGCGAGATAAGGGCCGTAAATCGCATTGAACAGCGTATACAGGAGGCCGAGAAGTTGGGCTTTGATGGTAT
TTTTATTTCTAAATTCAATACCAAAGGATTGGATGCTAAAAAATATGATATTGCCATTCGTCCGGTTGCCAAATTGGAAG
ACATCTTCAGTGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

52.495

100

0.525
  radA Streptococcus pneumoniae Rx1

52.495

100

0.525
  radA Streptococcus pneumoniae D39

52.495

100

0.525
  radA Streptococcus pneumoniae TIGR4

52.495

100

0.525
  radA Streptococcus mitis NCTC 12261

52.495

100

0.525
  radA Streptococcus mitis SK321

52.278

100

0.523
  radA Bacillus subtilis subsp. subtilis str. 168

53.725

96.095

0.516

Multiple sequence alignment