Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACK56M_RS07840 Genome accession   NZ_CP177209
Coordinates   1668918..1669553 (+) Length   211 a.a.
NCBI ID   WP_015269400.1    Uniprot ID   A0A2N5B7G8
Organism   Pseudomonas sp. s4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1663918..1674553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK56M_RS07820 (ACK56M_07820) - 1663929..1664861 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  ACK56M_RS07825 (ACK56M_07825) - 1664858..1665637 (+) 780 WP_015269397.1 ABC transporter permease -
  ACK56M_RS07830 (ACK56M_07830) - 1665647..1666153 (-) 507 Protein_1520 DUF2062 domain-containing protein -
  ACK56M_RS07835 (ACK56M_07835) comA 1666296..1668509 (+) 2214 WP_411959352.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACK56M_RS07840 (ACK56M_07840) exbB 1668918..1669553 (+) 636 WP_015269400.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACK56M_RS07845 (ACK56M_07845) - 1669550..1669984 (+) 435 WP_013971564.1 ExbD/TolR family protein -
  ACK56M_RS07850 (ACK56M_07850) lpxK 1669984..1670985 (+) 1002 WP_015269401.1 tetraacyldisaccharide 4'-kinase -
  ACK56M_RS07855 (ACK56M_07855) - 1671030..1671215 (+) 186 WP_011532874.1 Trm112 family protein -
  ACK56M_RS07860 (ACK56M_07860) kdsB 1671212..1671976 (+) 765 WP_015269402.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACK56M_RS07865 (ACK56M_07865) - 1671976..1672440 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  ACK56M_RS07870 (ACK56M_07870) murB 1672437..1673456 (+) 1020 WP_411959353.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22888.17 Da        Isoelectric Point: 7.3616

>NTDB_id=1086182 ACK56M_RS07840 WP_015269400.1 1668918..1669553(+) (exbB) [Pseudomonas sp. s4]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1086182 ACK56M_RS07840 WP_015269400.1 1668918..1669553(+) (exbB) [Pseudomonas sp. s4]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCGCACCTGCTGGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCCGCCGGTCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCTTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCTCCGCTGTTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTGTTGGCCGGTGGTATCTCCAAAGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCAGCGCCGCATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAGGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N5B7G8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.381

99.526

0.82

Multiple sequence alignment