Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACK8NJ_RS15110 Genome accession   NZ_CP177202
Coordinates   3087972..3088601 (-) Length   209 a.a.
NCBI ID   WP_032204873.1    Uniprot ID   -
Organism   Escherichia sp. F1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3082972..3093601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8NJ_RS15095 (ACK8NJ_15095) helD 3083214..3085268 (-) 2055 WP_024211660.1 DNA helicase IV -
  ACK8NJ_RS15100 (ACK8NJ_15100) - 3085391..3085837 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACK8NJ_RS15105 (ACK8NJ_15105) yccS 3085847..3088009 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ACK8NJ_RS15110 (ACK8NJ_15110) sxy/tfoX 3087972..3088601 (-) 630 WP_032204873.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACK8NJ_RS15115 (ACK8NJ_15115) sulA 3088820..3089329 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACK8NJ_RS15120 (ACK8NJ_15120) ompA 3089685..3090725 (+) 1041 WP_001314606.1 porin OmpA -
  ACK8NJ_RS15125 (ACK8NJ_15125) matP 3090802..3091254 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACK8NJ_RS15130 (ACK8NJ_15130) - 3091440..3093200 (+) 1761 WP_411961764.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.98 Da        Isoelectric Point: 9.2180

>NTDB_id=1086165 ACK8NJ_RS15110 WP_032204873.1 3087972..3088601(-) (sxy/tfoX) [Escherichia sp. F1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNISFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1086165 ACK8NJ_RS15110 WP_032204873.1 3087972..3088601(-) (sxy/tfoX) [Escherichia sp. F1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATTTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment