Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC17655_RS06440 Genome accession   NZ_CP177187
Coordinates   1263726..1264640 (-) Length   304 a.a.
NCBI ID   WP_087685408.1    Uniprot ID   -
Organism   Campylobacter lari strain RM17655     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1257905..1279994 1263726..1264640 within 0


Gene organization within MGE regions


Location: 1257905..1279994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC17655_RS06410 (UPTC17655_1261) - 1257905..1259062 (+) 1158 WP_087685403.1 peptidoglycan DD-metalloendopeptidase family protein -
  UPTC17655_RS06415 (UPTC17655_1262) mgtE 1259064..1260407 (+) 1344 WP_087685404.1 magnesium transporter -
  UPTC17655_RS06420 (UPTC17655_1263) tpx 1260420..1260938 (+) 519 WP_087685405.1 thiol peroxidase -
  UPTC17655_RS06425 (UPTC17655_1264) - 1260935..1262320 (-) 1386 WP_087685406.1 replicative DNA helicase -
  UPTC17655_RS06430 (UPTC17655_1265) cysK 1262333..1263235 (-) 903 WP_087685407.1 cysteine synthase A -
  UPTC17655_RS06435 (UPTC17655_1266) - 1263331..1263633 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC17655_RS06440 (UPTC17655_1267) waaF 1263726..1264640 (-) 915 WP_087685408.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC17655_RS06445 (UPTC17655_1268) - 1264693..1265499 (+) 807 WP_412097383.1 glycosyltransferase family 2 protein -
  UPTC17655_RS06450 (UPTC17655_1269) - 1265482..1266297 (-) 816 WP_257933418.1 hypothetical protein -
  UPTC17655_RS06455 - 1266294..1266587 (-) 294 WP_257933419.1 hypothetical protein -
  UPTC17655_RS06460 (UPTC17655_1270) - 1266676..1267575 (+) 900 WP_039642108.1 glycosyltransferase family 2 protein -
  UPTC17655_RS06465 (UPTC17655_1271) - 1267547..1268608 (-) 1062 WP_373274538.1 beta-1,4-N-acetylgalactosaminyltransferase -
  UPTC17655_RS06470 (UPTC17655_1272) - 1268667..1269878 (+) 1212 WP_412097438.1 glycosyltransferase family 2 protein -
  UPTC17655_RS06475 (UPTC17655_1273) - 1269875..1270810 (+) 936 WP_039642112.1 glycosyltransferase family 2 protein -
  UPTC17655_RS06480 (UPTC17655_1274) - 1270813..1271760 (+) 948 WP_052241424.1 capsular polysaccharide synthesis protein -
  UPTC17655_RS06485 (UPTC17655_1275) - 1271753..1272970 (+) 1218 WP_412097439.1 glycosyltransferase family 2 protein -
  UPTC17655_RS06490 (UPTC17655_1276) - 1272971..1274518 (-) 1548 WP_087685519.1 glycosyltransferase family 2 protein -
  UPTC17655_RS06495 (UPTC17655_1277) - 1274527..1275399 (-) 873 WP_087685518.1 lipid A biosynthesis lauroyl acyltransferase -
  UPTC17655_RS06500 (UPTC17655_1278) waaC 1275396..1276415 (-) 1020 WP_087685517.1 lipopolysaccharide heptosyltransferase I -
  UPTC17655_RS06505 (UPTC17655_1279) - 1276482..1277261 (+) 780 WP_039619042.1 3'-5' exonuclease -
  UPTC17655_RS06510 (UPTC17655_1280) galE 1277320..1278306 (+) 987 WP_039626879.1 UDP-glucose 4-epimerase GalE -
  UPTC17655_RS06515 (UPTC17655_1281) - 1278300..1279994 (+) 1695 WP_087685670.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34494.72 Da        Isoelectric Point: 10.2728

>NTDB_id=1086095 UPTC17655_RS06440 WP_087685408.1 1263726..1264640(-) (waaF) [Campylobacter lari strain RM17655]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKCFENAKILVENKKQRYGQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALSFKVTSNALKLPIKAKSTQKILGINAGAHFGSAKRW
EASYFARVAKEFSLTHQILIFGVESEREICNEIERFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1086095 UPTC17655_RS06440 WP_087685408.1 1263726..1264640(-) (waaF) [Campylobacter lari strain RM17655]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAGTGTTTTGAAAATGCTAAAATTT
TAGTAGAAAATAAAAAGCAAAGATATGGACAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCAGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTTATAGAAAAAGCTTTAAGTTTTAAAGTCACTTCAAATGCTTTAA
AGCTTCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATGCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTGGCAAAAGAATTTAGCCTCACGCATCAAATTTTAATTTTTGGGGTAGAAAGTGAGAG
AGAAATTTGTAATGAAATTGAGCGTTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACCAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGCTCGACTAAATTTAGTCAAACCTCACCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGTCCTTTAAAACACCACAAATGCATGAAAGACTTAAAGCCTG
AAGTAGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(140-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.968

100

0.671

Multiple sequence alignment