Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC17285_RS06385 Genome accession   NZ_CP177185
Coordinates   1258465..1259379 (-) Length   304 a.a.
NCBI ID   WP_257911266.1    Uniprot ID   -
Organism   Campylobacter lari strain RM17285     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1255674..1274734 1258465..1259379 within 0


Gene organization within MGE regions


Location: 1255674..1274734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC17285_RS06370 (UPTC17285_1257) - 1255674..1257059 (-) 1386 WP_039618998.1 replicative DNA helicase -
  UPTC17285_RS06375 (UPTC17285_1258) cysK 1257072..1257974 (-) 903 WP_214097840.1 cysteine synthase A -
  UPTC17285_RS06380 (UPTC17285_1259) - 1258070..1258372 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC17285_RS06385 (UPTC17285_1260) waaF 1258465..1259379 (-) 915 WP_257911266.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC17285_RS06390 (UPTC17285_1261) - 1259432..1260238 (+) 807 WP_412097383.1 glycosyltransferase family 2 protein -
  UPTC17285_RS06395 (UPTC17285_1262) - 1260221..1261300 (-) 1080 WP_412097384.1 hypothetical protein -
  UPTC17285_RS06400 (UPTC17285_1263) - 1261416..1262315 (+) 900 WP_039642108.1 glycosyltransferase family 2 protein -
  UPTC17285_RS06405 (UPTC17285_1264) - 1262287..1263348 (-) 1062 WP_373274538.1 beta-1,4-N-acetylgalactosaminyltransferase -
  UPTC17285_RS06410 (UPTC17285_1265) - 1263407..1264618 (+) 1212 WP_039642568.1 glycosyltransferase family 2 protein -
  UPTC17285_RS06415 (UPTC17285_1266) - 1264615..1265550 (+) 936 WP_039642112.1 glycosyltransferase family 2 protein -
  UPTC17285_RS06420 (UPTC17285_1267) - 1265553..1266500 (+) 948 WP_052241424.1 capsular polysaccharide synthesis protein -
  UPTC17285_RS06425 (UPTC17285_1268) - 1266493..1267710 (+) 1218 WP_039642117.1 glycosyltransferase family 2 protein -
  UPTC17285_RS06430 (UPTC17285_1269) - 1267711..1269258 (-) 1548 WP_087685519.1 glycosyltransferase family 2 protein -
  UPTC17285_RS06435 (UPTC17285_1270) - 1269267..1270139 (-) 873 WP_257911268.1 lipid A biosynthesis lauroyl acyltransferase -
  UPTC17285_RS06440 (UPTC17285_1271) waaC 1270136..1271155 (-) 1020 WP_087685517.1 lipopolysaccharide heptosyltransferase I -
  UPTC17285_RS06445 (UPTC17285_1272) - 1271222..1272001 (+) 780 WP_039619042.1 3'-5' exonuclease -
  UPTC17285_RS06450 (UPTC17285_1273) galE 1272060..1273046 (+) 987 WP_039626879.1 UDP-glucose 4-epimerase GalE -
  UPTC17285_RS06455 (UPTC17285_1274) - 1273040..1274734 (+) 1695 WP_087685670.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34480.65 Da        Isoelectric Point: 10.2346

>NTDB_id=1086078 UPTC17285_RS06385 WP_257911266.1 1258465..1259379(-) (waaF) [Campylobacter lari strain RM17285]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKCFENAKILVENKKQRYGQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALSFKVTSNALKLPIKAKSTQKILGINAGAHFGSAKRW
EASYFARVAKEFSLTHQILIFGVESEREICNEIERFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTNFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1086078 UPTC17285_RS06385 WP_257911266.1 1258465..1259379(-) (waaF) [Campylobacter lari strain RM17285]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAGTGTTTTGAAAATGCTAAAATTT
TAGTAGAAAATAAAAAGCAAAGATATGGACAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCAGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTTATAGAAAAAGCTTTAAGTTTTAAAGTCACTTCAAATGCTTTAA
AGCTTCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATGCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTGGCAAAAGAATTTAGCCTCACGCATCAAATTTTAATTTTTGGGGTAGAAAGTGAGAG
AGAAATTTGTAATGAAATTGAGCGTTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACCAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGCTCGACTAATTTTAGTCAAACCTCACCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGTCCTTTAAAACACCACAAATGCATGAAAGACTTAAAGCCTG
AAGTAGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(140-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.65

100

0.668

Multiple sequence alignment