Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC16703_RS06405 Genome accession   NZ_CP177183
Coordinates   1260491..1261405 (-) Length   304 a.a.
NCBI ID   WP_257911266.1    Uniprot ID   -
Organism   Campylobacter lari strain RM16703     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255491..1266405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16703_RS06380 (UPTC16703_1260) mgtE 1255829..1257172 (+) 1344 WP_257911265.1 magnesium transporter -
  UPTC16703_RS06385 (UPTC16703_1261) tpx 1257185..1257703 (+) 519 WP_214097841.1 thiol peroxidase -
  UPTC16703_RS06390 (UPTC16703_1262) - 1257700..1259085 (-) 1386 WP_039618998.1 replicative DNA helicase -
  UPTC16703_RS06395 (UPTC16703_1263) cysK 1259098..1260000 (-) 903 WP_214097840.1 cysteine synthase A -
  UPTC16703_RS06400 (UPTC16703_1264) - 1260096..1260398 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC16703_RS06405 (UPTC16703_1265) waaF 1260491..1261405 (-) 915 WP_257911266.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC16703_RS06410 (UPTC16703_1266) - 1261458..1262264 (+) 807 WP_412097383.1 glycosyltransferase family 2 protein -
  UPTC16703_RS06415 (UPTC16703_1267) - 1262247..1263326 (-) 1080 WP_412097384.1 hypothetical protein -
  UPTC16703_RS06420 (UPTC16703_1268) - 1263442..1264341 (+) 900 WP_039642108.1 glycosyltransferase family 2 protein -
  UPTC16703_RS06425 (UPTC16703_1269) - 1264313..1265383 (-) 1071 WP_373274705.1 beta-1,4-N-acetylgalactosaminyltransferase -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34480.65 Da        Isoelectric Point: 10.2346

>NTDB_id=1086062 UPTC16703_RS06405 WP_257911266.1 1260491..1261405(-) (waaF) [Campylobacter lari strain RM16703]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKCFENAKILVENKKQRYGQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALSFKVTSNALKLPIKAKSTQKILGINAGAHFGSAKRW
EASYFARVAKEFSLTHQILIFGVESEREICNEIERFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTNFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1086062 UPTC16703_RS06405 WP_257911266.1 1260491..1261405(-) (waaF) [Campylobacter lari strain RM16703]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAGTGTTTTGAAAATGCTAAAATTT
TAGTAGAAAATAAAAAGCAAAGATATGGACAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCAGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTTATAGAAAAAGCTTTAAGTTTTAAAGTCACTTCAAATGCTTTAA
AGCTTCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATGCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTGGCAAAAGAATTTAGCCTCACGCATCAAATTTTAATTTTTGGGGTAGAAAGTGAGAG
AGAAATTTGTAATGAAATTGAGCGTTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACCAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGCTCGACTAATTTTAGTCAAACCTCACCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGTCCTTTAAAACACCACAAATGCATGAAAGACTTAAAGCCTG
AAGTAGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(140-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.65

100

0.668

Multiple sequence alignment