Detailed information
Bioinformatically predicted
Overview
| Name | ctsD | Type | Machinery gene |
| Locus tag | UPTC16703_RS02020 | Genome accession | NZ_CP177183 |
| Coordinates | 381216..382607 (+) | Length | 463 a.a. |
| NCBI ID | WP_087685207.1 | Uniprot ID | A0A698GA44 |
| Organism | Campylobacter lari strain RM16703 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 376216..387607
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UPTC16703_RS02005 (UPTC16703_0396) | - | 376601..377245 (+) | 645 | WP_257910918.1 | HAD family hydrolase | - |
| UPTC16703_RS02010 (UPTC16703_0397) | nifJ | 377363..380917 (+) | 3555 | WP_257910915.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| UPTC16703_RS02015 (UPTC16703_0398) | - | 380984..381244 (+) | 261 | WP_126340701.1 | hypothetical protein | - |
| UPTC16703_RS02020 (UPTC16703_0399) | ctsD | 381216..382607 (+) | 1392 | WP_087685207.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| UPTC16703_RS02025 (UPTC16703_0400) | - | 382588..382917 (+) | 330 | WP_052243245.1 | transformation system, membrane protein CtsX | - |
| UPTC16703_RS02030 (UPTC16703_0401) | - | 382910..384424 (+) | 1515 | WP_087685208.1 | GspE/PulE family protein | - |
| UPTC16703_RS02035 (UPTC16703_0402) | - | 384421..385581 (+) | 1161 | WP_214098953.1 | type II secretion system F family protein | - |
| UPTC16703_RS02040 (UPTC16703_0403) | - | 385578..386330 (-) | 753 | WP_087685210.1 | TSUP family transporter | - |
| UPTC16703_RS02045 (UPTC16703_0404) | - | 386315..387064 (-) | 750 | WP_087685211.1 | TIGR02757 family protein | - |
Sequence
Protein
Download Length: 463 a.a. Molecular weight: 52569.39 Da Isoelectric Point: 7.9605
>NTDB_id=1086053 UPTC16703_RS02020 WP_087685207.1 381216..382607(+) (ctsD) [Campylobacter lari strain RM16703]
MKKIIFLFISVLTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGARNINLKANVETKAILNLLQENGKTIVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIKADKKVLSLKELGFEHEDDMF
MKKIIFLFISVLTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGARNINLKANVETKAILNLLQENGKTIVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIKADKKVLSLKELGFEHEDDMF
Nucleotide
Download Length: 1392 bp
>NTDB_id=1086053 UPTC16703_RS02020 WP_087685207.1 381216..382607(+) (ctsD) [Campylobacter lari strain RM16703]
ATGAAAAAAATAATATTTTTATTTATTAGTGTTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATCATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAATATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAACCTATTATCAATACTAATGCAGGGATTATTACTTTAAATGC
TACTTTGTATGAGCTTACAAGGGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTCGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATTAATAAAGGTGGTGCTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCATTGTGCTTTCTAACCCAAAACTCATGGCTCTTAATAATCAACAGGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAACCATAGACAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGCGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATTATCAAACCAAGCTTAATAAAGGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA
ATGAAAAAAATAATATTTTTATTTATTAGTGTTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATCATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAATATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAACCTATTATCAATACTAATGCAGGGATTATTACTTTAAATGC
TACTTTGTATGAGCTTACAAGGGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTCGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATTAATAAAGGTGGTGCTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCATTGTGCTTTCTAACCCAAAACTCATGGCTCTTAATAATCAACAGGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAACCATAGACAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGCGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATTATCAAACCAAGCTTAATAAAGGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsD | Campylobacter jejuni subsp. jejuni 81-176 |
56.41 |
100 |
0.57 |