Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   UPTC16703_RS01640 Genome accession   NZ_CP177183
Coordinates   302045..303223 (+) Length   392 a.a.
NCBI ID   WP_087685162.1    Uniprot ID   -
Organism   Campylobacter lari strain RM16703     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 297045..308223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16703_RS01625 (UPTC16703_0322) cysC 298234..298815 (+) 582 WP_087685159.1 adenylyl-sulfate kinase -
  UPTC16703_RS01630 (UPTC16703_0323) - 298815..299996 (+) 1182 WP_087685160.1 sulfotransferase family protein -
  UPTC16703_RS01635 (UPTC16703_0324) - 300021..302048 (+) 2028 WP_087685161.1 capsular polysaccharide biosynthesis protein -
  UPTC16703_RS01640 (UPTC16703_0325) kpsS 302045..303223 (+) 1179 WP_087685162.1 capsule biosynthesis protein Regulator
  UPTC16703_RS01645 (UPTC16703_0326) - 303220..304728 (-) 1509 WP_192860644.1 SGNH/GDSL hydrolase family protein -
  UPTC16703_RS01650 (UPTC16703_0327) - 304892..306022 (+) 1131 WP_087685163.1 DUF829 domain-containing protein -
  UPTC16703_RS01655 (UPTC16703_0328) - 306032..307405 (+) 1374 WP_257906129.1 cytochrome P450 -
  UPTC16703_RS01660 (UPTC16703_0329) - 307402..307755 (+) 354 WP_039627957.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46339.90 Da        Isoelectric Point: 10.1995

>NTDB_id=1086052 UPTC16703_RS01640 WP_087685162.1 302045..303223(+) (kpsS) [Campylobacter lari strain RM16703]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIATKIPKAKVYKVNFNGGDFFFYPFKSINYTKSLAELEDFYKKLFEEKQIQV
ILMYNDCRKVHEIAISVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSAFRNM
AFASFLYWFFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNGKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIVSFANHAKAKSYLVFKHHPMDRGYRDYTKFIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDVVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1086052 UPTC16703_RS01640 WP_087685162.1 302045..303223(+) (kpsS) [Campylobacter lari strain RM16703]
ATGAATTTAAGTAAAAAGTTAAAAAAATTTTCTGGTAAAAATGTTTTATTGCTCCAAGGACCTGTGGGTGGATTTTTTCG
TAAAATTGCTACAAAAATTCCAAAAGCTAAGGTTTATAAAGTAAATTTTAATGGCGGAGATTTTTTCTTTTACCCTTTTA
AAAGTATTAATTACACTAAAAGTTTAGCCGAGCTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAAACAAATTCAAGTT
ATCTTGATGTATAATGATTGTAGAAAAGTACACGAAATAGCCATTAGTGTTGCTAAACAAATGGGTATTGAAGTATGGAT
TTTTGAAGAAGGTTATATAAGACCAAATTTTATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCCACTTTGCCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGATAAAGATTTTAAATTTAAAACTTTCTCAAGTGCTTTTAGAAATATG
GCCTTTGCTTCGTTTTTATACTGGTTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACACCATAGAAGTTT
AAAACTATTTGACTTTTTACCTTGGCTTTGCTCAGTATATAGAAAAAACAAATACAAAATCACAGAAAAAAGTTTAAATG
GAAAAATTCTTTCCCTAAAACAAAAGTATTTTTTAGCTATTTTACAAGTGCATAATGATACCCAGCTATCTCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAAGTGATTGTCTCTTTTGCTAATCATGCCAAAGCAAAGTCTTATCTAGTTTT
TAAACACCATCCCATGGATCGTGGCTATAGGGACTATACTAAGTTTATAGAAGATTTGAGTTTAAAATACAATGTTGAGG
GTAGAATTTTATATGTGCATGATTTACACTTACCTACGCTCTTAATCAATGCAAGAGGCACTATAGTGATAAATAGCACG
GTAGGACTTTCTGCTTTATATCACAATAGTCCTTTAAAAGTTATGGGAAAAGCTTTTTATGATATAGAAGGTTTGACTTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGCAGGGCATATAAACCTGATGTGGTTTTACATGCTAAATTTAGAAATT
ATGTGATATATAAAACCCAAGTTAATGGGAATTTTTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.519

100

0.62

Multiple sequence alignment