Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACJWMD_RS09690 Genome accession   NZ_CP177182
Coordinates   2044247..2044957 (+) Length   236 a.a.
NCBI ID   WP_002887040.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2039247..2049957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS09680 treC 2040431..2042056 (-) 1626 WP_002887038.1 alpha,alpha-phosphotrehalase -
  ACJWMD_RS09685 treP 2042111..2044090 (-) 1980 WP_002887039.1 PTS system trehalose-specific EIIBC component -
  ACJWMD_RS09690 treR 2044247..2044957 (+) 711 WP_002887040.1 trehalose operon repressor Regulator
  ACJWMD_RS09695 - 2045011..2045571 (-) 561 WP_002887041.1 TIGR01440 family protein -
  ACJWMD_RS09700 - 2045587..2045925 (-) 339 WP_073689700.1 hypothetical protein -
  ACJWMD_RS09705 - 2045958..2046314 (-) 357 WP_002887042.1 hypothetical protein -
  ACJWMD_RS09710 - 2046525..2047511 (+) 987 WP_002886406.1 IS30 family transposase -
  ACJWMD_RS09715 - 2047702..2048583 (-) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27363.08 Da        Isoelectric Point: 7.4708

>NTDB_id=1086042 ACJWMD_RS09690 WP_002887040.1 2044247..2044957(+) (treR) [Streptococcus salivarius strain MRD6060]
MKKYQIIYKDLEKAIHDQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIVQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDTSLVPQLNRNIAEHSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCIRSKVYLTNGKQFQFTESRHKLEKFKFVDYAKRRH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1086042 ACJWMD_RS09690 WP_002887040.1 2044247..2044957(+) (treR) [Streptococcus salivarius strain MRD6060]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAGAAAGCTATCCATGATCAAAAATATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAAGCATTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAGATTCATGGCTCTGGCTCCCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAAGAGCTAATAGTACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGGTCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGCG
CCTCTGTTATAGATATTGATTACCTAGATACTAGCCTTGTTCCTCAACTAAACCGTAACATTGCTGAACACTCTATTTAC
GACTACATCGAGAATCAGCTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATTACTATTGATAATGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGTAAAGACCAGCACGTTGTTTGTATCCGTTCTAAAGTTTATTTAACTAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTCGATTATGCCAAGCGTCGTCATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.684

99.153

0.602

Multiple sequence alignment