Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACJWMD_RS09385 Genome accession   NZ_CP177182
Coordinates   1980514..1981875 (-) Length   453 a.a.
NCBI ID   WP_080562498.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1975514..1986875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS09360 rplA 1977260..1977949 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  ACJWMD_RS09365 rplK 1978049..1978474 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  ACJWMD_RS09370 - 1978646..1978999 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  ACJWMD_RS09375 - 1979094..1979591 (-) 498 WP_002886981.1 beta-class carbonic anhydrase -
  ACJWMD_RS09380 - 1979742..1980437 (-) 696 WP_002885783.1 TIGR00266 family protein -
  ACJWMD_RS09385 radA 1980514..1981875 (-) 1362 WP_080562498.1 DNA repair protein RadA Machinery gene
  ACJWMD_RS09390 - 1981872..1982339 (-) 468 WP_002886984.1 isochorismatase family protein -
  ACJWMD_RS09395 - 1982349..1982795 (-) 447 WP_002886985.1 dUTP diphosphatase -
  ACJWMD_RS09400 - 1983002..1983604 (+) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  ACJWMD_RS09405 - 1983623..1984873 (+) 1251 WP_002886987.1 NAD(P)H-dependent oxidoreductase -
  ACJWMD_RS09410 - 1984990..1985781 (+) 792 WP_002886988.1 formate/nitrite transporter family protein -
  ACJWMD_RS09415 - 1985790..1986356 (+) 567 WP_002886989.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49477.89 Da        Isoelectric Point: 6.9531

>NTDB_id=1086033 ACJWMD_RS09385 WP_080562498.1 1980514..1981875(-) (radA) [Streptococcus salivarius strain MRD6060]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIRVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1086033 ACJWMD_RS09385 WP_080562498.1 1980514..1981875(-) (radA) [Streptococcus salivarius strain MRD6060]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGTTGTCCCAACTG
TTCTTCCTGGTCCTCTTTTGAGGAGGAAGTTGAGGTGCAGGAGGTGAAAAATGCTCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAATTAAAAGAAGTCTCTTCAATTAATTATGCCCGCATAAAGACTGACATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGTAGTCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCGACTCTTCTCTTACA
AGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACTAATATGCAAGCCGTTCGCAGCCAAGTGGAG
GCTATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCAGGCGTTCAAGGCTCTGT
ATCTCAGGTTCGTGAAGTTACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCTACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGTTGGCTGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGTGAACGT
CATCACACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACTAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTGCTAAATCCTAGCCAGGTTTTCTTAGAGGAACGCCTAGACGGAGCCACAGGTTCTGCCATTG
TTGTAACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACCCCAACCGTCTTTGGTAATGCCAAG
CGGACAACAACAGGACTGGATTTTAACCGCGTCAGCCTTATCATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCTTATTTAAAATCAGCAGGTGGTGTCAAATTGGACGAGCCGGCTATTGACCTTGCTGTCGCTGTTGCGA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCTTTTATAGGAGAAATTGGCTTGACTGGAGAGATTCGC
CGAGTGACTCGCATTGAACAGCGTATTAATGAAGCTGCTAAACTAGGTTTTACTAAGATTTATGCTCCCAAAAATTCTCT
ACATGGTATGAAAATTCCAGAAGGTATCCGGGTGGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.521

100

0.885
  radA Streptococcus pneumoniae D39

88.521

100

0.885
  radA Streptococcus pneumoniae R6

88.521

100

0.885
  radA Streptococcus pneumoniae TIGR4

88.521

100

0.885
  radA Streptococcus mitis NCTC 12261

88.521

100

0.885
  radA Streptococcus mitis SK321

88.521

100

0.885
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment