Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   ACJWMD_RS08425 Genome accession   NZ_CP177182
Coordinates   1781437..1782513 (-) Length   358 a.a.
NCBI ID   WP_004183329.1    Uniprot ID   A0AB33ZCX3
Organism   Streptococcus salivarius strain MRD6060     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1776437..1787513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS08400 - 1776582..1777364 (+) 783 WP_004183323.1 ABC transporter ATP-binding protein -
  ACJWMD_RS08405 - 1777548..1779614 (-) 2067 WP_004183325.1 cation:proton antiporter -
  ACJWMD_RS08410 - 1779623..1779865 (-) 243 WP_002891697.1 hypothetical protein -
  ACJWMD_RS08415 - 1779862..1780410 (-) 549 WP_004183327.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  ACJWMD_RS08420 - 1780407..1781351 (-) 945 WP_004183328.1 TIGR01212 family radical SAM protein -
  ACJWMD_RS08425 sepM 1781437..1782513 (-) 1077 WP_004183329.1 SepM family pheromone-processing serine protease Regulator
  ACJWMD_RS08430 coaD 1782491..1782988 (-) 498 WP_004183331.1 pantetheine-phosphate adenylyltransferase -
  ACJWMD_RS08435 rsmD 1783021..1783620 (-) 600 WP_080562493.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACJWMD_RS08440 trxB 1783711..1784664 (-) 954 WP_255296714.1 thioredoxin-disulfide reductase -
  ACJWMD_RS08445 - 1784697..1784921 (-) 225 WP_002884393.1 DUF4059 family protein -
  ACJWMD_RS08450 - 1785133..1785876 (-) 744 WP_004183334.1 amino acid ABC transporter ATP-binding protein -
  ACJWMD_RS08455 - 1785876..1786622 (-) 747 WP_118058287.1 amino acid ABC transporter permease -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 38974.64 Da        Isoelectric Point: 9.2472

>NTDB_id=1086029 ACJWMD_RS08425 WP_004183329.1 1781437..1782513(-) (sepM) [Streptococcus salivarius strain MRD6060]
MANKNESKSLLGKIWRIKWWLLSIFTVLFLLFALFFPLNNYYVELPGGAFDTKEVLTVDKKADDSKGSYNFVAVAQTKAT
LALMLYAQLNDFAKLQTAEEATGNYSDEDFMRINQFYMETSQNQAIYQGLTLAGKEASLEYMGVYVLQVADDSSFKGVLN
IADTVTAVNGKSFDNSADLIKYVQGLKLGSKVKVTYTTDDKEKTATGKIIKIANGKNGIGIGLTDHTEVKSPENVKFKLD
GVGGPSAGLMFTLAIYDQVSGQDLKAGRKIAGTGTIEKDGSVGDIGGAYLKVKSAADSGADIFFVPNNPVTKEMKKADPD
AKTNYQEAKEAAKKLGTKMKIVPVKTAQEAIDYLKKTK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=1086029 ACJWMD_RS08425 WP_004183329.1 1781437..1782513(-) (sepM) [Streptococcus salivarius strain MRD6060]
GTGGCAAACAAGAACGAATCTAAATCACTATTAGGGAAAATTTGGCGGATTAAGTGGTGGTTGTTAAGTATTTTTACGGT
ACTTTTCCTCCTCTTTGCCCTCTTTTTCCCGCTAAATAATTATTATGTTGAGCTTCCGGGTGGTGCTTTTGATACCAAGG
AAGTCTTGACTGTAGACAAGAAAGCTGATGATTCAAAAGGATCCTACAATTTTGTGGCGGTGGCTCAAACCAAGGCGACT
TTGGCCTTGATGCTCTATGCTCAGCTTAATGATTTTGCAAAGCTTCAAACAGCTGAAGAGGCAACTGGGAATTACTCTGA
TGAAGATTTCATGCGTATCAACCAATTTTACATGGAGACTTCCCAAAACCAAGCGATTTATCAGGGCTTGACTCTGGCTG
GTAAGGAGGCTAGCTTGGAGTATATGGGTGTTTATGTGCTTCAGGTGGCTGACGATTCTAGCTTTAAGGGTGTCCTCAAT
ATTGCGGATACGGTGACGGCTGTCAATGGCAAGTCTTTTGATAATTCTGCTGACTTGATTAAATACGTTCAAGGACTTAA
GTTGGGTTCAAAGGTCAAGGTCACTTATACGACAGATGATAAAGAAAAGACTGCTACTGGTAAGATTATCAAGATTGCCA
ATGGTAAAAACGGTATTGGTATCGGTTTGACGGATCATACCGAGGTCAAGAGTCCTGAAAATGTGAAGTTTAAACTTGAT
GGTGTCGGTGGACCAAGTGCGGGTCTTATGTTTACTCTAGCTATTTACGATCAGGTGTCTGGTCAAGATCTTAAGGCTGG
TCGTAAGATTGCTGGAACAGGAACCATTGAAAAGGATGGTTCTGTCGGTGATATCGGTGGTGCCTACCTTAAGGTGAAAT
CAGCGGCTGATAGTGGTGCAGACATTTTCTTTGTACCAAATAATCCGGTAACCAAGGAAATGAAAAAGGCTGATCCGGAT
GCCAAAACCAACTATCAAGAGGCCAAGGAAGCTGCCAAGAAACTGGGAACCAAGATGAAAATCGTCCCTGTTAAAACAGC
TCAAGAAGCCATTGATTATTTGAAAAAGACTAAATAA

Domains


Predicted by InterproScan.

(142-206)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

65.103

95.251

0.62


Multiple sequence alignment