Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ACJWMD_RS06270 Genome accession   NZ_CP177182
Coordinates   1360782..1361084 (-) Length   100 a.a.
NCBI ID   WP_004182757.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1355782..1366084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS06265 - 1357628..1360618 (-) 2991 WP_004182756.1 type I restriction endonuclease subunit R -
  ACJWMD_RS06270 HI0659 1360782..1361084 (-) 303 WP_004182757.1 helix-turn-helix domain-containing protein Machinery gene
  ACJWMD_RS06275 - 1361086..1361439 (-) 354 WP_004182758.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACJWMD_RS06280 - 1361676..1362440 (-) 765 WP_004182759.1 SDR family NAD(P)-dependent oxidoreductase -
  ACJWMD_RS06285 - 1362472..1363629 (-) 1158 WP_004182760.1 Mbeg1-like protein -
  ACJWMD_RS06290 - 1363739..1364365 (+) 627 WP_004182761.1 Pr6Pr family membrane protein -
  ACJWMD_RS06295 - 1364403..1365245 (-) 843 WP_004182762.1 Cof-type HAD-IIB family hydrolase -
  ACJWMD_RS06300 - 1365397..1365786 (+) 390 WP_004182763.1 hypothetical protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10936.85 Da        Isoelectric Point: 9.7589

>NTDB_id=1086019 ACJWMD_RS06270 WP_004182757.1 1360782..1361084(-) (HI0659) [Streptococcus salivarius strain MRD6060]
MTPEKNPAIGSSWDDLQKTIFTKEEIAASELRVALMLEIIDARKKQGISQKKLEELSGVKQPVIARMETGKTAPQLDTVL
KILASLGKTLAVVPLDSHVK

Nucleotide


Download         Length: 303 bp        

>NTDB_id=1086019 ACJWMD_RS06270 WP_004182757.1 1360782..1361084(-) (HI0659) [Streptococcus salivarius strain MRD6060]
ATGACTCCAGAAAAGAATCCAGCAATTGGAAGTAGTTGGGATGATTTACAGAAAACTATTTTCACTAAAGAGGAAATCGC
GGCAAGTGAACTCCGTGTCGCACTGATGCTTGAGATTATTGATGCTCGTAAAAAACAAGGCATTTCTCAAAAGAAACTTG
AAGAATTGAGTGGTGTCAAACAACCTGTTATCGCACGTATGGAGACAGGTAAAACGGCACCTCAGTTAGATACGGTTCTT
AAAATACTGGCTAGTCTAGGTAAGACATTGGCAGTAGTCCCACTTGATTCACATGTGAAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.92

87

0.53

Multiple sequence alignment