Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ACJWMD_RS06240 Genome accession   NZ_CP177182
Coordinates   1350879..1351172 (-) Length   97 a.a.
NCBI ID   WP_004182751.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345879..1356172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS06225 - 1348031..1348240 (-) 210 WP_004182748.1 hypothetical protein -
  ACJWMD_RS06230 - 1348267..1349178 (-) 912 WP_004182749.1 Rpn family recombination-promoting nuclease/putative transposase -
  ACJWMD_RS06235 - 1349256..1350857 (-) 1602 WP_004182750.1 type I restriction-modification system subunit M -
  ACJWMD_RS06240 HI0659 1350879..1351172 (-) 294 WP_004182751.1 helix-turn-helix domain-containing protein Machinery gene
  ACJWMD_RS06245 - 1351162..1351389 (-) 228 Protein_1181 type II toxin-antitoxin system RelE/ParE family toxin -
  ACJWMD_RS06250 - 1351735..1353597 (-) 1863 WP_004182753.1 P-loop NTPase fold protein -
  ACJWMD_RS06255 - 1353612..1354772 (-) 1161 WP_004182754.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10716.41 Da        Isoelectric Point: 5.1991

>NTDB_id=1086018 ACJWMD_RS06240 WP_004182751.1 1350879..1351172(-) (HI0659) [Streptococcus salivarius strain MRD6060]
MNNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1086018 ACJWMD_RS06240 WP_004182751.1 1350879..1351172(-) (HI0659) [Streptococcus salivarius strain MRD6060]
ATGAACAATAGTGCCATCGGAAGCAATTGGAAGGATGTGAGAGCAGAGCTCTTCACTAAGGAAGAAATCCTGGAAAGTGA
TCTGCGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGGCATGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTAA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGACACGGTTTTGAAAGTCTTA
GCTAGTCTGGGCAAGACCCTCGCTGTCGTCCCACTGGAACAAGAAAAGGTCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.674

91.753

0.557

Multiple sequence alignment