Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ACJWMD_RS02115 Genome accession   NZ_CP177182
Coordinates   395409..395840 (+) Length   143 a.a.
NCBI ID   WP_002886694.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 390409..400840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS02100 gdhA 391474..392826 (+) 1353 WP_002886690.1 NADP-specific glutamate dehydrogenase -
  ACJWMD_RS02105 - 393406..394653 (+) 1248 WP_335926180.1 hypothetical protein -
  ACJWMD_RS02110 - 394810..395220 (+) 411 WP_002886693.1 peptide deformylase -
  ACJWMD_RS02115 rcrR 395409..395840 (+) 432 WP_002886694.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  ACJWMD_RS02120 - 395856..397600 (+) 1745 Protein_359 ABC transporter ATP-binding protein -
  ACJWMD_RS02125 rcrQ 397590..399368 (+) 1779 WP_002886696.1 ABC transporter ATP-binding protein Regulator
  ACJWMD_RS02130 - 399476..400099 (+) 624 WP_002886697.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16569.94 Da        Isoelectric Point: 9.3419

>NTDB_id=1085994 ACJWMD_RS02115 WP_002886694.1 395409..395840(+) (rcrR) [Streptococcus salivarius strain MRD6060]
MHGKDPFSDFREIINAMESRVQELGKVHGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKRLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAKDVGHFREAIHEQLLDGISKEDAETAFRVFHQIRKNLE

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1085994 ACJWMD_RS02115 WP_002886694.1 395409..395840(+) (rcrR) [Streptococcus salivarius strain MRD6060]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAAATCATCAATGCTATGGAATCTCGCGTGCAAGAGTTAGGGAAGGT
CCACGGTGTTGAACATTTAGCCGGCCCACAAGGATTTGCTGTCAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATCGAGAAAAGACTATCTATTTCCAAGTCTGTGGCTAGTAATCTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTGGGTAAAAAGAAGGCCAAAGA
TGTTGGACATTTCCGAGAGGCTATCCATGAACAGTTGTTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCCTTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

57.857

97.902

0.566

Multiple sequence alignment