Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SP5448_RS03315 Genome accession   NZ_CP008776
Coordinates   654282..655943 (+) Length   553 a.a.
NCBI ID   WP_010922485.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 5448     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 649282..660943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP5448_RS03285 (SP5448_03405) - 649571..650425 (+) 855 WP_010922486.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  SP5448_RS03290 (SP5448_03410) xseA 650578..651918 (+) 1341 WP_002992349.1 exodeoxyribonuclease VII large subunit -
  SP5448_RS03295 (SP5448_03415) - 651896..652111 (+) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  SP5448_RS03300 (SP5448_03420) - 652111..652983 (+) 873 WP_003056941.1 polyprenyl synthetase family protein -
  SP5448_RS03305 (SP5448_03425) - 652976..653803 (+) 828 WP_003056952.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  SP5448_RS03310 (SP5448_03430) - 653790..654260 (+) 471 WP_002983907.1 arginine repressor -
  SP5448_RS03315 (SP5448_03435) recN 654282..655943 (+) 1662 WP_010922485.1 DNA repair protein RecN Machinery gene
  SP5448_RS03320 (SP5448_03440) - 656115..657056 (+) 942 WP_011285633.1 LPXTG cell wall anchor domain-containing protein -
  SP5448_RS03325 (SP5448_03445) - 657284..658123 (+) 840 WP_002989125.1 DegV family protein -
  SP5448_RS03330 (SP5448_03450) - 658116..658958 (+) 843 WP_002992620.1 SGNH/GDSL hydrolase family protein -
  SP5448_RS03335 (SP5448_03455) - 658936..659523 (+) 588 WP_010922482.1 YpmS family protein -
  SP5448_RS03340 (SP5448_03460) - 659622..659897 (+) 276 WP_002983920.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62185.36 Da        Isoelectric Point: 4.5840

>NTDB_id=108599 SP5448_RS03315 WP_010922485.1 654282..655943(+) (recN) [Streptococcus pyogenes strain 5448]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDILNSLTRKYGGNV
NDVLDYYDNIVKEYQLLTGDDLSSGDLEAELKSLEKQLVAAASELSVSRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=108599 SP5448_RS03315 WP_010922485.1 654282..655943(+) (recN) [Streptococcus pyogenes strain 5448]
ATGTTATTAGAAATTTCTATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGAGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAT
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGCTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAGTACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATATACTCAATAGCTTAACTCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATCGTCAAAGAATACCAGCTATTAACAGGAGATGACTTGTCTTCAGGGGATCT
AGAGGCAGAATTGAAAAGCTTGGAAAAACAATTGGTTGCTGCTGCTTCGGAGTTAAGTGTCTCTCGCCATCAATTGGCGG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTTAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCTATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAACTACTTGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.452

Multiple sequence alignment