Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACJWMC_RS09765 Genome accession   NZ_CP177181
Coordinates   2088516..2089226 (+) Length   236 a.a.
NCBI ID   WP_002887040.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD1919     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2083516..2094226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMC_RS09755 treC 2084692..2086317 (-) 1626 WP_002892063.1 alpha,alpha-phosphotrehalase -
  ACJWMC_RS09760 treP 2086380..2088359 (-) 1980 WP_037598539.1 PTS system trehalose-specific EIIBC component -
  ACJWMC_RS09765 treR 2088516..2089226 (+) 711 WP_002887040.1 trehalose operon repressor Regulator
  ACJWMC_RS09770 - 2089280..2089840 (-) 561 WP_014632528.1 TIGR01440 family protein -
  ACJWMC_RS09775 - 2089856..2090194 (-) 339 WP_002892071.1 hypothetical protein -
  ACJWMC_RS09780 - 2090227..2090583 (-) 357 WP_002892073.1 hypothetical protein -
  ACJWMC_RS09785 - 2090885..2091766 (-) 882 WP_002885816.1 class II fructose-bisphosphate aldolase -
  ACJWMC_RS09795 - 2092190..2093485 (-) 1296 WP_002892075.1 hypothetical protein -
  ACJWMC_RS09800 rplQ 2093734..2094120 (-) 387 WP_002885709.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27363.08 Da        Isoelectric Point: 7.4708

>NTDB_id=1085974 ACJWMC_RS09765 WP_002887040.1 2088516..2089226(+) (treR) [Streptococcus salivarius strain MRD1919]
MKKYQIIYKDLEKAIHDQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIVQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDTSLVPQLNRNIAEHSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCIRSKVYLTNGKQFQFTESRHKLEKFKFVDYAKRRH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1085974 ACJWMC_RS09765 WP_002887040.1 2088516..2089226(+) (treR) [Streptococcus salivarius strain MRD1919]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGATCAAAAATATCAAGTAGGAGACTTTCTCCC
GACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAAGCATTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAGATTCATGGCTCTGGCTCACAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAGGAGCTAATAGTACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGGTCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGCG
CCTCTGTTATAGATATTGATTACCTAGATACTAGCCTTGTTCCTCAACTAAACCGTAACATTGCTGAACACTCTATTTAC
GACTACATCGAGAATCAGCTCAACCTTAGCATTTCCCATGCCTTTAAAGAAATCACTATTGATAATGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGTAAAGACCAGCACGTTGTTTGTATCCGTTCTAAAGTTTATTTAACTAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTCGATTATGCCAAGCGTCGTCATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.684

99.153

0.602

Multiple sequence alignment