Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACJVG6_RS09665 Genome accession   NZ_CP177180
Coordinates   2046277..2046987 (+) Length   236 a.a.
NCBI ID   WP_002887040.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2041277..2051987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS09655 treC 2042461..2044086 (-) 1626 WP_002887038.1 alpha,alpha-phosphotrehalase -
  ACJVG6_RS09660 treP 2044141..2046120 (-) 1980 WP_002887039.1 PTS system trehalose-specific EIIBC component -
  ACJVG6_RS09665 treR 2046277..2046987 (+) 711 WP_002887040.1 trehalose operon repressor Regulator
  ACJVG6_RS09670 - 2047041..2047601 (-) 561 WP_002887041.1 TIGR01440 family protein -
  ACJVG6_RS09675 - 2047617..2047955 (-) 339 WP_073689700.1 hypothetical protein -
  ACJVG6_RS09680 - 2047988..2048344 (-) 357 WP_002887042.1 hypothetical protein -
  ACJVG6_RS09685 - 2048555..2049541 (+) 987 WP_002886406.1 IS30 family transposase -
  ACJVG6_RS09690 - 2049732..2050613 (-) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27363.08 Da        Isoelectric Point: 7.4708

>NTDB_id=1085904 ACJVG6_RS09665 WP_002887040.1 2046277..2046987(+) (treR) [Streptococcus salivarius strain MRD-KRBY]
MKKYQIIYKDLEKAIHDQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIVQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDTSLVPQLNRNIAEHSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCIRSKVYLTNGKQFQFTESRHKLEKFKFVDYAKRRH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1085904 ACJVG6_RS09665 WP_002887040.1 2046277..2046987(+) (treR) [Streptococcus salivarius strain MRD-KRBY]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAGAAAGCTATCCATGATCAAAAATATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAAGCATTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAGATTCATGGCTCTGGCTCCCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAAGAGCTAATAGTACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGGTCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGCG
CCTCTGTTATAGATATTGATTACCTAGATACTAGCCTTGTTCCTCAACTAAACCGTAACATTGCTGAACACTCTATTTAC
GACTACATCGAGAATCAGCTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATTACTATTGATAATGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGTAAAGACCAGCACGTTGTTTGTATCCGTTCTAAAGTTTATTTAACTAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTCGATTATGCCAAGCGTCGTCATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.684

99.153

0.602

Multiple sequence alignment