Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ACJVG6_RS02100 Genome accession   NZ_CP177180
Coordinates   396809..397240 (+) Length   143 a.a.
NCBI ID   WP_002886694.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 391809..402240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS02085 gdhA 392874..394226 (+) 1353 WP_002886690.1 NADP-specific glutamate dehydrogenase -
  ACJVG6_RS02090 - 394512..396053 (+) 1542 WP_002886692.1 hypothetical protein -
  ACJVG6_RS02095 - 396210..396620 (+) 411 WP_002886693.1 peptide deformylase -
  ACJVG6_RS02100 rcrR 396809..397240 (+) 432 WP_002886694.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  ACJVG6_RS02105 - 397256..399000 (+) 1745 Protein_353 ABC transporter ATP-binding protein -
  ACJVG6_RS02110 rcrQ 398990..400768 (+) 1779 WP_002886696.1 ABC transporter ATP-binding protein Regulator
  ACJVG6_RS02115 - 400876..401499 (+) 624 WP_002886697.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16569.94 Da        Isoelectric Point: 9.3419

>NTDB_id=1085856 ACJVG6_RS02100 WP_002886694.1 396809..397240(+) (rcrR) [Streptococcus salivarius strain MRD-KRBY]
MHGKDPFSDFREIINAMESRVQELGKVHGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKRLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAKDVGHFREAIHEQLLDGISKEDAETAFRVFHQIRKNLE

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1085856 ACJVG6_RS02100 WP_002886694.1 396809..397240(+) (rcrR) [Streptococcus salivarius strain MRD-KRBY]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAAATCATCAATGCTATGGAATCTCGCGTGCAAGAGTTAGGGAAGGT
CCACGGTGTTGAACATTTAGCCGGCCCACAAGGATTTGCTGTCAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATCGAGAAAAGACTATCTATTTCCAAGTCTGTGGCTAGTAATCTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTGGGTAAAAAGAAGGCCAAAGA
TGTTGGACATTTCCGAGAGGCTATCCATGAACAGTTGTTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCCTTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

57.857

97.902

0.566

Multiple sequence alignment