Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACKTWR_RS04880 Genome accession   NZ_AP031304
Coordinates   923642..925009 (+) Length   455 a.a.
NCBI ID   WP_213431080.1    Uniprot ID   -
Organism   Paenibacillus melissococcoides strain J22TS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 918642..930009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTWR_RS04855 (PMJ22TS4_09860) - 918681..919145 (+) 465 WP_213431084.1 CtsR family transcriptional regulator -
  ACKTWR_RS04860 (PMJ22TS4_09870) - 919247..919810 (+) 564 WP_213431083.1 UvrB/UvrC motif-containing protein -
  ACKTWR_RS04865 (PMJ22TS4_09880) - 919871..920956 (+) 1086 WP_213431082.1 protein arginine kinase -
  ACKTWR_RS04870 (PMJ22TS4_09890) clpC 920959..923397 (+) 2439 WP_213431081.1 ATP-dependent protease ATP-binding subunit ClpC -
  ACKTWR_RS04875 (PMJ22TS4_09900) - 923448..923627 (+) 180 WP_261949076.1 hypothetical protein -
  ACKTWR_RS04880 (PMJ22TS4_09910) radA 923642..925009 (+) 1368 WP_213431080.1 DNA repair protein RadA Machinery gene
  ACKTWR_RS04885 (PMJ22TS4_09920) disA 925026..926099 (+) 1074 WP_213431079.1 DNA integrity scanning diadenylate cyclase DisA -
  ACKTWR_RS04890 (PMJ22TS4_09930) pssA 926154..926882 (+) 729 WP_197253706.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  ACKTWR_RS04895 - 927001..927162 (-) 162 Protein_950 DUF1573 domain-containing protein -
  ACKTWR_RS04900 (PMJ22TS4_09960) - 927373..927717 (-) 345 WP_213431383.1 hypothetical protein -
  ACKTWR_RS04905 (PMJ22TS4_09970) - 927729..929021 (-) 1293 WP_213431382.1 phage tail protein -
  ACKTWR_RS04910 (PMJ22TS4_09980) - 929011..929331 (-) 321 WP_213431381.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49295.81 Da        Isoelectric Point: 6.4025

>NTDB_id=108573 ACKTWR_RS04880 WP_213431080.1 923642..925009(+) (radA) [Paenibacillus melissococcoides strain J22TS4]
MAKVKTKFFCTDCGYESPKWMGKCPGCGEWNTMVEERETVVKTAGVHTSLIQTKEKPQSIIQIESKQEARLSTTIDELNR
VLGGGVVPGSLILVGGDPGIGKSTLLLQASNALAASGLKVLYVSGEESTRQTKLRADRLGVLSERLFVLSETNLQYIEEA
IEAMSPDFLVIDSIQTVYQPSVESAPGSVAQVRECTSVCMRIAKGRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHSYRILRAVKNRFGSTNEIGIFEMTEGGLTEVKNPSEMFLQERPLGVSGSTVVASLEGTRPVLVEMQALVSATNFPS
PRRMSTGIDHQRLSLIIAVLEKRMGMFLQNQDAYVNVAGGLKLDEPAVDLAIAVALASSFRDMPTQAYDVVFGEVGLTGE
VRAVSRAEQRVKEAEKLGFKRIILPEKSLRGWTPSGHIEIVGVNTVAEALTAALG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=108573 ACKTWR_RS04880 WP_213431080.1 923642..925009(+) (radA) [Paenibacillus melissococcoides strain J22TS4]
ATGGCCAAAGTAAAAACCAAGTTTTTCTGTACGGATTGCGGATATGAATCCCCGAAGTGGATGGGCAAATGCCCGGGCTG
CGGCGAGTGGAACACAATGGTGGAGGAGCGGGAGACGGTCGTCAAGACGGCGGGCGTCCACACTTCCCTCATTCAAACGA
AAGAAAAACCGCAATCGATCATACAAATAGAAAGTAAACAGGAAGCGCGCCTGTCCACGACGATCGATGAATTGAACCGC
GTGCTCGGCGGCGGCGTGGTGCCGGGCTCGCTCATCCTCGTGGGCGGCGACCCGGGCATCGGCAAATCGACGCTGCTGCT
GCAGGCGTCCAACGCGCTGGCAGCAAGCGGCCTGAAGGTGCTGTATGTGTCCGGGGAGGAATCGACGCGCCAGACGAAGC
TGCGCGCCGACCGGCTCGGGGTGCTATCCGAGCGCTTGTTCGTCCTGAGCGAGACGAATTTGCAGTATATTGAAGAGGCG
ATCGAGGCCATGAGCCCGGACTTTCTCGTCATCGACTCGATTCAGACGGTATATCAGCCGTCGGTCGAATCGGCGCCCGG
CAGCGTGGCCCAAGTTCGCGAATGCACAAGCGTGTGCATGCGCATTGCGAAGGGAAGGGGCATCGCGACCGTGCTCGTCG
GCCATGTGACGAAGGAAGGAGCCATTGCCGGCCCCCGGATGCTGGAGCATATGGTGGACTGCGTGCTCTATTTCGAAGGC
GAGCGCCATCACTCGTACCGCATCCTGCGGGCCGTGAAGAACCGCTTCGGTTCCACGAACGAGATCGGCATCTTCGAGAT
GACGGAGGGCGGGTTGACGGAAGTGAAGAATCCGTCGGAGATGTTCCTTCAGGAACGCCCGCTGGGCGTCTCCGGATCGA
CGGTTGTCGCCAGCCTGGAGGGAACGCGGCCGGTGCTTGTCGAGATGCAGGCGCTCGTGTCGGCGACGAACTTCCCTTCG
CCGCGGAGAATGTCGACGGGAATCGATCATCAGCGTCTGTCGCTTATCATTGCCGTACTGGAGAAGCGCATGGGCATGTT
CCTTCAGAACCAGGACGCGTATGTGAATGTGGCCGGCGGGCTGAAGCTGGATGAGCCGGCGGTCGATCTCGCGATTGCGG
TCGCCCTGGCGTCGAGCTTCCGCGATATGCCGACCCAGGCCTATGACGTGGTCTTCGGCGAGGTGGGACTGACAGGAGAA
GTGCGCGCGGTGTCCCGTGCGGAACAGCGCGTGAAGGAAGCCGAGAAGCTCGGCTTCAAGCGAATTATTTTGCCAGAGAA
GAGCCTGCGGGGATGGACCCCTTCTGGACATATTGAGATAGTGGGCGTAAATACGGTAGCGGAAGCATTGACCGCGGCGT
TAGGTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)

AAA domain (AAA_25)

(62-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.083

100

0.664
  radA Streptococcus mitis NCTC 12261

58.222

98.901

0.576
  radA Streptococcus mitis SK321

58.222

98.901

0.576
  radA Streptococcus pneumoniae Rx1

58

98.901

0.574
  radA Streptococcus pneumoniae D39

58

98.901

0.574
  radA Streptococcus pneumoniae R6

58

98.901

0.574
  radA Streptococcus pneumoniae TIGR4

58

98.901

0.574

Multiple sequence alignment