Detailed information NTG1085586

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ACLBNB_RS09975
• Genome accession: NZ_CP177156
• Coordinates: 2184876..2187107 (+)
• Length: 743 a.a.
• NCBI ID: WP_124310675.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain YL-21
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2179876..2192107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLBNB_RS09950 (ACLBNB_09950)	-	2180997..2181656 (+)	660	WP_038580923.1	transglutaminase-like domain-containing protein	-
ACLBNB_RS09955 (ACLBNB_09955)	-	2181699..2182322 (+)	624	WP_124310674.1	glutathione S-transferase family protein	-
ACLBNB_RS09960 (ACLBNB_09960)	-	2182455..2183387 (+)	933	WP_053268526.1	ABC transporter ATP-binding protein	-
ACLBNB_RS09965 (ACLBNB_09965)	-	2183384..2184163 (+)	780	WP_007931651.1	ABC transporter permease	-
ACLBNB_RS09970 (ACLBNB_09970)	-	2184212..2184727 (-)	516	WP_038580916.1	DUF2062 domain-containing protein	-
ACLBNB_RS09975 (ACLBNB_09975)	comA	2184876..2187107 (+)	2232	WP_124310675.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ACLBNB_RS09980 (ACLBNB_09980)	exbB	2187210..2187845 (+)	636	WP_009047817.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ACLBNB_RS09985 (ACLBNB_09985)	-	2187842..2188270 (+)	429	WP_009047818.1	ExbD/TolR family protein	-
ACLBNB_RS09990 (ACLBNB_09990)	lpxK	2188270..2189280 (+)	1011	WP_124310676.1	tetraacyldisaccharide 4'-kinase	-
ACLBNB_RS09995 (ACLBNB_09995)	-	2189304..2189489 (+)	186	WP_007931663.1	Trm112 family protein	-
ACLBNB_RS10000 (ACLBNB_10000)	kdsB	2189486..2190250 (+)	765	WP_124310677.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ACLBNB_RS10005 (ACLBNB_10005)	-	2190250..2190714 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
ACLBNB_RS10010 (ACLBNB_10010)	murB	2190711..2191730 (+)	1020	WP_124312962.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81232.38 Da
• Isoelectric Point: 9.9468

>NTDB_id=1085586 ACLBNB_RS09975 WP_124310675.1 2184876..2187107(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain YL-21]
MRTGMLALAAGLLSLRFLPALPALGWLAVLPVVALMLLPFRTYALALFLLGLTWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPLHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGGWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYVL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNTVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGVERLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCVSGEQWQWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GSYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=1085586 ACLBNB_RS09975 WP_124310675.1 2184876..2187107(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain YL-21]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGCTCGGATGGCT
GGCCGTGTTGCCGGTAGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATGCATTGGCACTTTTTCTGTTGGGCCTGACGT
GGGCTTGCGTCAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGATGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGATTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCTCGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGCTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGTCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGTATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGTTGCCGCTGAGGGTGGCTGGCGTGCGCGTATTCGCCAGCGCTTGCTGCAGGTCGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGCGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCATTTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGTCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCATTCGCTTC
GGCCCTGGGGTACGGGTTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCATTTCTGCTGGCGTTGAATACGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTATCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGTCTGGGAGG
TTGGCGCTGGTGGCAATCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGCTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGATGTGCTGTT
TCGCGGTCTGGCGCTATTGGCTGCCCAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGTATCAGTG
CGCTGGGAGCCTTTCTGCTGTTGCTGCCCGCTGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGTTGTTGATGGTG
TTTCCGCCGAAAAACACCCTGCCATACGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGGCTGGCGGTACTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGCCCGCGTTTGGGTGACTCCGACCTGGGCGCCCGGGTGGTGCTGC
CATCCTTGCGCAAGCTGGGCGTCGAGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCTGGTGGCGCC
GACGCCGTCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGTGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGTCAGCGGCGAGCAATGGCAATGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGTTGCTGACGGGGGATATCGATGCCCTGGCGGAA
CGCGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGCGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTAAGGTTGATGCTG
GGCAGCTACACCGAACCGACGAGCCTGAGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624