Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SP5448_RS00185 Genome accession   NZ_CP008776
Coordinates   27760..28515 (+) Length   251 a.a.
NCBI ID   WP_002986719.1    Uniprot ID   A2RBY9
Organism   Streptococcus pyogenes strain 5448     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 22760..33515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP5448_RS09965 - 24135..24416 (-) 282 WP_111689438.1 transposase -
  SP5448_RS00175 (SP5448_00185) pcsB 25163..26359 (+) 1197 WP_010921769.1 peptidoglycan hydrolase PcsB -
  SP5448_RS00180 (SP5448_00190) - 26612..27574 (+) 963 WP_002986722.1 ribose-phosphate diphosphokinase -
  SP5448_RS00185 (SP5448_00195) recO 27760..28515 (+) 756 WP_002986719.1 DNA repair protein RecO Machinery gene
  SP5448_RS00190 (SP5448_00200) plsX 28618..29625 (+) 1008 WP_002987696.1 phosphate acyltransferase PlsX -
  SP5448_RS00195 (SP5448_00205) - 29618..29860 (+) 243 WP_010921770.1 phosphopantetheine-binding protein -
  SP5448_RS00200 (SP5448_00210) purC 30011..30715 (+) 705 WP_015055882.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29516.97 Da        Isoelectric Point: 6.9077

>NTDB_id=108555 SP5448_RS00185 WP_002986719.1 27760..28515(+) (recO) [Streptococcus pyogenes strain 5448]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=108555 SP5448_RS00185 WP_002986719.1 27760..28515(+) (recO) [Streptococcus pyogenes strain 5448]
ATGCAACTAACAGAATCACTAGGCATCGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCACTGATTTA
CCGCTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RBY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602

Multiple sequence alignment