Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACLHWE_RS03885 Genome accession   NZ_CP177124
Coordinates   833517..835334 (-) Length   605 a.a.
NCBI ID   WP_193991273.1    Uniprot ID   -
Organism   Vagococcus salmoninarum strain 2022-01     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 828517..840334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLHWE_RS03860 (ACLHWE_03860) - 829531..830421 (-) 891 WP_126780867.1 RluA family pseudouridine synthase -
  ACLHWE_RS03865 (ACLHWE_03865) - 830429..831241 (-) 813 WP_193991268.1 NAD kinase -
  ACLHWE_RS03870 (ACLHWE_03870) - 831258..831965 (-) 708 WP_193991271.1 GTP pyrophosphokinase family protein -
  ACLHWE_RS03875 (ACLHWE_03875) - 832159..832749 (+) 591 WP_126780873.1 CYTH domain-containing protein -
  ACLHWE_RS03880 (ACLHWE_03880) - 832833..833480 (+) 648 WP_126780875.1 DsbA family protein -
  ACLHWE_RS03885 (ACLHWE_03885) pepF 833517..835334 (-) 1818 WP_193991273.1 oligoendopeptidase F Regulator
  ACLHWE_RS03890 (ACLHWE_03890) - 835389..836549 (-) 1161 WP_170174762.1 competence protein CoiA -
  ACLHWE_RS03895 (ACLHWE_03895) - 836638..837903 (-) 1266 WP_126780326.1 NCS2 family permease -
  ACLHWE_RS03900 (ACLHWE_03900) - 838078..839097 (-) 1020 WP_193991275.1 YeiH family protein -
  ACLHWE_RS03905 (ACLHWE_03905) - 839223..840110 (+) 888 WP_193991277.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68833.77 Da        Isoelectric Point: 4.5432

>NTDB_id=1085498 ACLHWE_RS03885 WP_193991273.1 833517..835334(-) (pepF) [Vagococcus salmoninarum strain 2022-01]
MSEAKQLPKREELLEKDTWDLTKIFPNDQAFEDSFAAFNQELVEASSYQGTLATGADAFLAALTFIGEISRKFEVLYVYS
HLKNDQDTANTTYQGMHAKAGSLGAQANEAISWFEPELLQLTDEQVWAYFDENSDLEIYRHFVTNILSDRPHVLSEKEEA
LLAGAGEIFGAAGRTFSIFNNADLKFPTVKNDKGETIQLSHGVYGQLLESTDPQVREEAFKGMYSVYEQFQNTMATNLSN
HVKTHNYQATVRNYSSAREASLANNHIPEAVYDTLLHVVDKNLPLLHRYVALRKELLGVETLHMYDMYTPILGEAPIRYS
YDEAREKAITALQPLGAEYMAVVEEAFSSRWIDVVENQGKRSGAYSSGCYDTAPYILMNWHDSLDQLYTLVHEMGHSVHS
YFTRSNQPYVYGDYSIFLAEIASTTNENLLTEYLLATETDPEVRAFVLNRYLDGFKGTIFRQTQFAEFEHFIHTEDAKGV
PLTAEYLNTYYADLNAKYYGEAVARDSEIAVEWARIPHFYYNHYVYQYSTGFSAASTLAEKIYTEETGALDKYLTYLKAG
NSDFPIEVMKKAGVDMTEATYIEEAMKVFEARLNEFETLVASFKK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1085498 ACLHWE_RS03885 WP_193991273.1 833517..835334(-) (pepF) [Vagococcus salmoninarum strain 2022-01]
ATGAGTGAAGCAAAACAATTACCAAAACGTGAGGAACTACTTGAAAAAGACACTTGGGATTTAACCAAAATCTTTCCAAA
TGATCAAGCTTTTGAAGACAGTTTCGCCGCATTTAATCAAGAACTAGTCGAGGCCAGCAGTTACCAAGGGACTTTAGCCA
CTGGAGCCGATGCTTTCTTAGCAGCCTTAACTTTTATTGGGGAAATTTCTCGGAAGTTTGAAGTTCTTTATGTCTATTCT
CATTTAAAAAATGACCAAGATACAGCGAATACGACGTACCAAGGCATGCACGCCAAAGCAGGGAGTTTAGGGGCACAAGC
TAATGAAGCCATTTCCTGGTTTGAACCAGAATTACTGCAATTAACTGATGAGCAAGTCTGGGCTTACTTTGATGAGAATT
CTGATTTAGAAATTTACCGTCATTTTGTCACTAATATTTTAAGTGACAGACCACACGTTTTATCAGAAAAAGAAGAAGCG
TTATTAGCTGGTGCAGGTGAAATTTTCGGCGCAGCTGGCAGAACTTTCTCAATTTTTAATAATGCGGATTTAAAATTCCC
GACAGTTAAAAATGACAAAGGTGAAACGATTCAATTGTCTCACGGTGTTTATGGTCAACTCTTAGAAAGCACTGACCCAC
AAGTCCGTGAAGAGGCTTTTAAAGGCATGTATAGTGTCTATGAGCAGTTCCAAAACACAATGGCGACTAACTTATCGAAT
CACGTTAAGACTCATAACTATCAAGCAACAGTTCGTAATTACAGCTCAGCTCGGGAAGCGTCATTAGCGAATAATCATAT
TCCAGAAGCTGTGTATGACACATTGTTACATGTTGTTGATAAAAACTTACCTTTGTTACATCGTTATGTGGCATTACGTA
AAGAGTTACTAGGAGTAGAGACGTTACACATGTATGACATGTATACACCGATTCTTGGGGAAGCACCGATTCGTTATTCA
TATGATGAAGCCCGTGAAAAAGCAATCACTGCTTTACAACCTCTAGGGGCTGAATATATGGCAGTCGTTGAAGAAGCCTT
TAGTAGCCGTTGGATCGATGTTGTTGAAAACCAAGGGAAGCGTAGTGGGGCTTACTCTTCAGGTTGTTACGATACAGCAC
CTTATATTTTAATGAACTGGCACGATAGCTTAGATCAATTGTATACTCTCGTCCATGAAATGGGCCATAGTGTTCATAGT
TACTTTACTCGTAGTAATCAACCGTACGTTTATGGGGATTATTCAATTTTCTTAGCAGAAATTGCCTCAACAACTAATGA
AAACTTATTAACGGAGTACTTACTAGCAACGGAGACTGATCCAGAAGTTCGGGCCTTTGTTTTAAACCGTTACTTAGACG
GCTTTAAAGGCACGATTTTCCGTCAAACTCAGTTTGCTGAATTTGAGCACTTTATCCATACGGAAGATGCTAAAGGTGTT
CCTTTAACAGCTGAGTATTTAAATACTTACTATGCTGATTTAAATGCTAAATATTACGGTGAAGCAGTCGCTCGTGACAG
TGAAATTGCTGTTGAGTGGGCCCGTATTCCTCATTTCTACTACAATCACTACGTGTACCAATATTCAACTGGTTTCTCAG
CAGCATCAACGTTAGCTGAAAAAATTTATACTGAAGAAACTGGCGCCTTAGATAAGTACTTAACTTATTTAAAAGCAGGT
AACAGTGATTTCCCAATTGAAGTTATGAAAAAAGCTGGCGTCGACATGACAGAAGCAACGTATATTGAAGAAGCGATGAA
AGTCTTTGAAGCTCGTTTAAATGAGTTTGAAACGCTAGTAGCTAGCTTTAAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.469

97.686

0.522

Multiple sequence alignment