Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACLHWB_RS12250 Genome accession   NZ_CP177123
Coordinates   2568647..2570326 (+) Length   559 a.a.
NCBI ID   WP_193990278.1    Uniprot ID   -
Organism   Vagococcus salmoninarum strain 2022-03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2563647..2575326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLHWB_RS12220 (ACLHWB_12220) - 2563980..2564810 (+) 831 WP_193990272.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  ACLHWB_RS12225 (ACLHWB_12225) xseA 2564834..2566183 (+) 1350 WP_193990274.1 exodeoxyribonuclease VII large subunit -
  ACLHWB_RS12230 (ACLHWB_12230) - 2566185..2566415 (+) 231 WP_126780629.1 exodeoxyribonuclease VII small subunit -
  ACLHWB_RS12235 (ACLHWB_12235) - 2566418..2567314 (+) 897 WP_193990276.1 polyprenyl synthetase family protein -
  ACLHWB_RS12240 (ACLHWB_12240) - 2567330..2568160 (+) 831 WP_126780633.1 TlyA family RNA methyltransferase -
  ACLHWB_RS12245 (ACLHWB_12245) - 2568180..2568635 (+) 456 WP_126780635.1 arginine repressor -
  ACLHWB_RS12250 (ACLHWB_12250) recN 2568647..2570326 (+) 1680 WP_193990278.1 DNA repair protein RecN Machinery gene
  ACLHWB_RS12255 (ACLHWB_12255) - 2570358..2570471 (-) 114 WP_126780639.1 DUF4044 domain-containing protein -
  ACLHWB_RS12260 (ACLHWB_12260) - 2570604..2571557 (-) 954 WP_170174770.1 magnesium transporter CorA family protein -
  ACLHWB_RS12265 (ACLHWB_12265) - 2571843..2572211 (+) 369 WP_126780643.1 DUF3397 domain-containing protein -
  ACLHWB_RS12270 (ACLHWB_12270) mraZ 2572393..2572824 (+) 432 WP_126780646.1 division/cell wall cluster transcriptional repressor MraZ -
  ACLHWB_RS12275 (ACLHWB_12275) rsmH 2572848..2573801 (+) 954 WP_126780648.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  ACLHWB_RS12280 (ACLHWB_12280) ftsL 2573820..2574197 (+) 378 WP_126780650.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 62576.71 Da        Isoelectric Point: 4.5238

>NTDB_id=1085484 ACLHWB_RS12250 WP_193990278.1 2568647..2570326(+) (recN) [Vagococcus salmoninarum strain 2022-03]
MLQELSIQNFAIISNLDVSFKEGMTVLTGETGAGKSIIIDAVGLLVGGRGSSDYIRQGAQKCTLQGQFSVTLNPNLSQLL
TELAIELDDNVLIVSREIHRSGKNACRINGTLINTGKLREIGTYLVDIHGQNEHQELMHADSHLNLVDQFGGEELKRLLV
NYQLAYNQYRQTLQQIKAKRTNEKAFVQRLDMLKFQCDEIASGELTVGEEVTLIEERNRLSNFQKIADALSNSYEAIVGG
EDSSLDRVGMGMNELIEIEDIDTEYSDISEVLKNSYYQLQEVSSTISRSLDALEMDEGRLDEVETRLAVIRQLKRKYGET
EEIILAYYEEISEELAAADQLENRSEHLEQLLGEQKTVLDIESQKLTSKRKQISKKLEQAILGQLKELYMDKTEFEVRFA
ESGSDNYSETGVDQLEFYITTNPGEPLKPLVKVVSGGELSRVMLALKTIFSQSQGITSIVFDEVDTGVSGRVAQAIANKI
HQVAENSQVLCITHLPQVAAVADIQYFIEKTVTNQRTETSLRQLDAEERVLEVARMLSGDAITTLTKEHARELLQLAKK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=1085484 ACLHWB_RS12250 WP_193990278.1 2568647..2570326(+) (recN) [Vagococcus salmoninarum strain 2022-03]
ATGTTACAAGAACTATCAATTCAAAATTTTGCGATAATCTCTAACTTAGATGTCTCTTTTAAAGAAGGGATGACGGTCTT
AACAGGTGAAACCGGCGCTGGTAAATCGATAATTATTGACGCTGTTGGTTTATTAGTCGGCGGGCGAGGCTCAAGTGACT
ATATTCGCCAAGGCGCTCAAAAGTGTACGTTACAAGGCCAATTTAGCGTGACGCTAAACCCTAATTTAAGCCAATTGCTG
ACAGAGTTAGCAATCGAATTAGATGACAATGTGTTAATTGTTTCCCGGGAAATCCACCGAAGCGGTAAGAATGCTTGTCG
CATCAATGGAACCTTAATCAATACCGGTAAATTAAGAGAAATTGGCACCTATTTAGTTGATATCCACGGTCAAAATGAGC
ATCAGGAATTAATGCATGCCGACAGTCATTTAAATTTAGTGGATCAGTTTGGTGGGGAAGAGTTAAAACGACTCTTAGTC
AATTATCAACTTGCATACAACCAGTACCGGCAAACGTTACAACAAATTAAAGCGAAACGAACAAATGAAAAAGCTTTTGT
GCAACGCTTAGACATGTTGAAATTTCAATGTGATGAAATTGCCAGTGGGGAATTAACCGTTGGCGAAGAGGTCACTTTAA
TTGAAGAGCGAAATCGGTTAAGTAATTTTCAGAAAATTGCTGATGCTTTAAGTAATAGTTATGAAGCCATCGTTGGTGGA
GAAGACAGTAGTCTGGACCGAGTGGGGATGGGGATGAATGAATTAATTGAAATTGAAGACATTGACACAGAGTACAGTGA
CATTTCTGAAGTTTTGAAAAACAGTTATTACCAACTCCAAGAAGTTAGTTCAACTATTTCCCGTAGTCTAGATGCTTTAG
AAATGGACGAAGGCCGCTTAGATGAAGTCGAAACCCGTTTAGCAGTTATTCGTCAGTTGAAGCGCAAATACGGTGAAACA
GAAGAGATTATTTTAGCTTATTACGAAGAGATTAGTGAAGAATTAGCAGCTGCTGATCAATTAGAAAATCGCAGCGAGCA
TTTAGAACAACTTCTAGGTGAACAAAAAACAGTCTTAGATATTGAAAGTCAAAAGCTGACGAGTAAACGTAAGCAAATTA
GTAAAAAGTTAGAACAGGCAATTTTGGGCCAATTAAAAGAATTATATATGGATAAAACCGAGTTCGAAGTCCGTTTTGCC
GAAAGTGGTTCAGACAATTACAGTGAAACAGGTGTCGATCAGTTAGAATTTTACATCACGACCAATCCTGGGGAGCCTTT
GAAACCCTTAGTTAAAGTTGTGTCTGGTGGCGAATTATCACGAGTGATGTTAGCCTTAAAAACAATCTTTTCTCAAAGCC
AAGGCATTACGAGTATTGTTTTTGATGAAGTCGACACTGGAGTGAGTGGCCGAGTGGCTCAAGCAATCGCCAATAAAATT
CATCAAGTAGCAGAAAATTCCCAAGTCTTATGTATTACGCATCTGCCTCAAGTGGCAGCAGTAGCTGATATTCAATACTT
TATTGAAAAAACTGTGACAAACCAGCGAACAGAGACTTCTTTAAGACAGTTAGATGCTGAGGAACGGGTCTTAGAAGTTG
CTAGAATGTTATCAGGTGATGCCATTACGACGTTAACAAAAGAACATGCTCGTGAGTTATTACAATTAGCAAAAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.691

100

0.499

Multiple sequence alignment