Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACLIMH_RS09710 Genome accession   NZ_CP177046
Coordinates   1891595..1891882 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus thuringiensis strain MPB12     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1886595..1896882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMH_RS09690 (ACLIMH_09690) - 1887771..1887968 (+) 198 WP_001048092.1 DUF4083 domain-containing protein -
  ACLIMH_RS09695 (ACLIMH_09695) - 1888000..1888461 (+) 462 WP_087931641.1 NUDIX hydrolase -
  ACLIMH_RS09700 (ACLIMH_09700) nadE 1888508..1889326 (-) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  ACLIMH_RS09705 (ACLIMH_09705) - 1889598..1891478 (+) 1881 WP_001990338.1 FtsX-like permease family protein -
  ACLIMH_RS09710 (ACLIMH_09710) abrB 1891595..1891882 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACLIMH_RS09715 (ACLIMH_09715) - 1892157..1893107 (+) 951 WP_001089035.1 serine protease -
  ACLIMH_RS09720 (ACLIMH_09720) - 1893148..1893456 (-) 309 WP_001259894.1 ArsR/SmtB family transcription factor -
  ACLIMH_RS09725 (ACLIMH_09725) - 1893564..1894499 (+) 936 WP_087931643.1 aldo/keto reductase -
  ACLIMH_RS09730 (ACLIMH_09730) - 1894548..1895723 (+) 1176 WP_411470083.1 MFS transporter -
  ACLIMH_RS09735 (ACLIMH_09735) - 1895912..1896136 (-) 225 WP_000162601.1 hypothetical protein -
  ACLIMH_RS09740 (ACLIMH_09740) - 1896221..1896568 (-) 348 WP_000426313.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=1085261 ACLIMH_RS09710 WP_000648331.1 1891595..1891882(+) (abrB) [Bacillus thuringiensis strain MPB12]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1085261 ACLIMH_RS09710 WP_000648331.1 1891595..1891882(+) (abrB) [Bacillus thuringiensis strain MPB12]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment