Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ACLIMI_RS12310 Genome accession   NZ_CP177045
Coordinates   2340804..2341286 (-) Length   160 a.a.
NCBI ID   WP_048349895.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MPB11     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2283262..2352097 2340804..2341286 within 0


Gene organization within MGE regions


Location: 2283262..2352097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMI_RS11995 (ACLIMI_11995) - 2283262..2283960 (+) 699 WP_017474478.1 DUF4258 domain-containing protein -
  ACLIMI_RS12000 (ACLIMI_12000) - 2283974..2284384 (+) 411 WP_073425962.1 DUF2283 domain-containing protein -
  ACLIMI_RS12005 (ACLIMI_12005) - 2284964..2285407 (+) 444 WP_034291537.1 hypothetical protein -
  ACLIMI_RS12010 (ACLIMI_12010) - 2285441..2288215 (+) 2775 WP_346805692.1 hypothetical protein -
  ACLIMI_RS12015 (ACLIMI_12015) - 2288212..2289012 (+) 801 WP_075223471.1 hypothetical protein -
  ACLIMI_RS12020 (ACLIMI_12020) - 2289118..2289393 (+) 276 WP_075223472.1 HU family DNA-binding protein -
  ACLIMI_RS12030 (ACLIMI_12030) - 2290330..2290845 (+) 516 WP_075223473.1 hypothetical protein -
  ACLIMI_RS12035 (ACLIMI_12035) - 2291496..2291699 (+) 204 WP_043928512.1 YonK family protein -
  ACLIMI_RS12040 (ACLIMI_12040) - 2291712..2292905 (+) 1194 WP_346805691.1 metallophosphoesterase family protein -
  ACLIMI_RS12045 (ACLIMI_12045) - 2293260..2293889 (-) 630 WP_021837898.1 hypothetical protein -
  ACLIMI_RS12050 (ACLIMI_12050) - 2294170..2295102 (+) 933 WP_021837897.1 hypothetical protein -
  ACLIMI_RS12055 (ACLIMI_12055) - 2295086..2296855 (+) 1770 WP_073425953.1 terminase large subunit domain-containing protein -
  ACLIMI_RS12060 (ACLIMI_12060) - 2296873..2298393 (+) 1521 WP_075223475.1 hypothetical protein -
  ACLIMI_RS12065 (ACLIMI_12065) - 2298427..2299845 (+) 1419 WP_075223476.1 hypothetical protein -
  ACLIMI_RS12070 (ACLIMI_12070) - 2299869..2300471 (+) 603 WP_075223477.1 hypothetical protein -
  ACLIMI_RS12075 (ACLIMI_12075) - 2300512..2301528 (+) 1017 WP_075223478.1 hypothetical protein -
  ACLIMI_RS12080 (ACLIMI_12080) - 2301563..2302033 (+) 471 WP_009328375.1 hypothetical protein -
  ACLIMI_RS12085 (ACLIMI_12085) - 2302045..2302443 (+) 399 WP_009328376.1 hypothetical protein -
  ACLIMI_RS12090 (ACLIMI_12090) - 2302440..2302670 (+) 231 WP_009328377.1 hypothetical protein -
  ACLIMI_RS12095 (ACLIMI_12095) - 2302657..2303316 (+) 660 WP_009328378.1 hypothetical protein -
  ACLIMI_RS12100 (ACLIMI_12100) - 2303313..2303843 (+) 531 WP_009328379.1 hypothetical protein -
  ACLIMI_RS12105 (ACLIMI_12105) - 2303840..2304550 (+) 711 WP_009328380.1 hypothetical protein -
  ACLIMI_RS12110 (ACLIMI_12110) - 2304582..2305415 (+) 834 WP_075223479.1 hypothetical protein -
  ACLIMI_RS12115 (ACLIMI_12115) - 2305455..2305820 (+) 366 WP_075223480.1 collagen-like protein -
  ACLIMI_RS12120 (ACLIMI_12120) - 2305929..2306294 (+) 366 WP_026579451.1 hypothetical protein -
  ACLIMI_RS12125 (ACLIMI_12125) - 2306297..2307925 (+) 1629 WP_081375414.1 DNA-packaging protein -
  ACLIMI_RS12130 (ACLIMI_12130) - 2307938..2308264 (+) 327 WP_016886028.1 hypothetical protein -
  ACLIMI_RS12135 (ACLIMI_12135) - 2308261..2308452 (+) 192 WP_075223481.1 XkdX family protein -
  ACLIMI_RS12140 (ACLIMI_12140) - 2308488..2308976 (+) 489 WP_241660503.1 hypothetical protein -
  ACLIMI_RS12145 (ACLIMI_12145) - 2308978..2309397 (+) 420 WP_075223483.1 hypothetical protein -
  ACLIMI_RS12150 (ACLIMI_12150) - 2309402..2310403 (+) 1002 WP_075223484.1 tyrosine-type recombinase/integrase -
  ACLIMI_RS12155 (ACLIMI_12155) - 2310550..2311053 (+) 504 WP_034291543.1 hypothetical protein -
  ACLIMI_RS12160 (ACLIMI_12160) - 2311050..2312105 (+) 1056 WP_009328391.1 serine/threonine-protein kinase -
  ACLIMI_RS12165 (ACLIMI_12165) - 2312445..2312711 (+) 267 WP_075223485.1 hypothetical protein -
  ACLIMI_RS12170 (ACLIMI_12170) - 2313033..2313335 (-) 303 WP_075223486.1 hypothetical protein -
  ACLIMI_RS12175 (ACLIMI_12175) - 2313445..2313903 (+) 459 WP_075223487.1 hypothetical protein -
  ACLIMI_RS12180 (ACLIMI_12180) - 2313979..2314353 (+) 375 WP_075223488.1 hypothetical protein -
  ACLIMI_RS12185 (ACLIMI_12185) - 2314465..2314929 (+) 465 WP_026579440.1 hypothetical protein -
  ACLIMI_RS12190 (ACLIMI_12190) - 2315181..2315621 (-) 441 WP_075223489.1 hypothetical protein -
  ACLIMI_RS12195 (ACLIMI_12195) - 2315845..2316117 (-) 273 WP_050820995.1 DUF3986 family protein -
  ACLIMI_RS12200 (ACLIMI_12200) - 2316133..2316756 (-) 624 WP_050820996.1 hypothetical protein -
  ACLIMI_RS12205 (ACLIMI_12205) - 2316947..2317573 (+) 627 WP_241660504.1 hypothetical protein -
  ACLIMI_RS12210 (ACLIMI_12210) - 2317583..2317741 (-) 159 WP_075223490.1 ribbon-helix-helix domain-containing protein -
  ACLIMI_RS12215 (ACLIMI_12215) - 2317897..2318124 (+) 228 WP_075223491.1 hypothetical protein -
  ACLIMI_RS12220 (ACLIMI_12220) - 2318121..2319905 (+) 1785 WP_075223492.1 hypothetical protein -
  ACLIMI_RS12225 (ACLIMI_12225) - 2319929..2320180 (+) 252 WP_075223493.1 hypothetical protein -
  ACLIMI_RS12230 (ACLIMI_12230) - 2320270..2321907 (+) 1638 WP_241660505.1 phage tail tape measure protein -
  ACLIMI_RS12235 (ACLIMI_12235) - 2322324..2327489 (+) 5166 WP_411469447.1 phage tail tape measure protein -
  ACLIMI_RS12240 (ACLIMI_12240) - 2327546..2328307 (+) 762 WP_075223495.1 distal tail protein Dit -
  ACLIMI_RS12245 (ACLIMI_12245) - 2328311..2330950 (+) 2640 WP_075223496.1 phage tail spike protein -
  ACLIMI_RS12250 (ACLIMI_12250) - 2330966..2331763 (+) 798 WP_075223497.1 hypothetical protein -
  ACLIMI_RS12255 (ACLIMI_12255) - 2331782..2334400 (+) 2619 WP_075223498.1 peptidase G2 autoproteolytic cleavage domain-containing protein -
  ACLIMI_RS12260 (ACLIMI_12260) - 2334420..2334578 (+) 159 WP_164943120.1 hypothetical protein -
  ACLIMI_RS12265 (ACLIMI_12265) - 2334730..2335818 (+) 1089 WP_048349898.1 N-acetylmuramoyl-L-alanine amidase -
  ACLIMI_RS12270 (ACLIMI_12270) - 2335950..2336336 (+) 387 WP_016886002.1 hypothetical protein -
  ACLIMI_RS12275 (ACLIMI_12275) - 2336355..2336609 (+) 255 WP_021837857.1 phage holin -
  ACLIMI_RS12280 (ACLIMI_12280) - 2336628..2336927 (+) 300 WP_048349897.1 hypothetical protein -
  ACLIMI_RS12285 (ACLIMI_12285) - 2337127..2337213 (+) 87 WP_219993970.1 putative holin-like toxin -
  ACLIMI_RS12290 (ACLIMI_12290) - 2337647..2337775 (-) 129 WP_021837855.1 hypothetical protein -
  ACLIMI_RS12295 (ACLIMI_12295) - 2337772..2338872 (-) 1101 WP_080623910.1 tetratricopeptide repeat protein -
  ACLIMI_RS12300 (ACLIMI_12300) - 2338984..2340240 (-) 1257 WP_048349896.1 MFS transporter -
  ACLIMI_RS12305 (ACLIMI_12305) - 2340381..2340734 (-) 354 WP_026579425.1 hypothetical protein -
  ACLIMI_RS12310 (ACLIMI_12310) rok 2340804..2341286 (-) 483 WP_048349895.1 hypothetical protein Regulator
  ACLIMI_RS12315 (ACLIMI_12315) - 2341396..2341971 (-) 576 WP_048349894.1 SMI1/KNR4 family protein -
  ACLIMI_RS12320 (ACLIMI_12320) - 2342064..2342537 (-) 474 WP_057957858.1 SMI1/KNR4 family protein -
  ACLIMI_RS12325 (ACLIMI_12325) - 2342578..2343000 (-) 423 WP_048350255.1 SMI1/KNR4 family protein -
  ACLIMI_RS12330 (ACLIMI_12330) - 2343205..2343654 (-) 450 WP_048350256.1 SMI1/KNR4 family protein -
  ACLIMI_RS12335 (ACLIMI_12335) - 2343651..2345582 (-) 1932 WP_411469478.1 T7SS effector LXG polymorphic toxin -
  ACLIMI_RS12340 (ACLIMI_12340) - 2345906..2346679 (-) 774 WP_048350257.1 acetoin reductase -
  ACLIMI_RS12345 (ACLIMI_12345) - 2346787..2347083 (-) 297 WP_048350258.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  ACLIMI_RS12350 (ACLIMI_12350) - 2347335..2348285 (-) 951 WP_373431793.1 methyl-accepting chemotaxis protein -
  ACLIMI_RS12355 (ACLIMI_12355) - 2348280..2349320 (-) 1041 Protein_2393 cache domain-containing protein -
  ACLIMI_RS12360 (ACLIMI_12360) - 2349672..2350361 (-) 690 WP_346805690.1 hypothetical protein -
  ACLIMI_RS12365 (ACLIMI_12365) - 2350529..2352097 (-) 1569 WP_346805689.1 recombinase family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18413.18 Da        Isoelectric Point: 10.3708

>NTDB_id=1085204 ACLIMI_RS12310 WP_048349895.1 2340804..2341286(-) (rok) [Bacillus licheniformis strain MPB11]
MFNEREALRLRLEQLNDKEIIVMRELREEREGIYSKLRELDKKQSNPPQVRESSSLMDLVSAAAQELKQSKSSSPHIQTN
TASQPFNKSITSIQREAALKILSMHKEGIRGASLRNEIEKETGMKVKNMTAFMSGLMKHHPEVKKPGRGHYIIKHEKSFE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1085204 ACLIMI_RS12310 WP_048349895.1 2340804..2341286(-) (rok) [Bacillus licheniformis strain MPB11]
ATGTTTAATGAGCGAGAGGCGTTACGCTTGAGGCTTGAGCAGCTAAACGATAAAGAAATTATTGTCATGAGAGAACTTAG
AGAAGAACGAGAAGGTATTTATTCAAAGTTGCGTGAGTTGGACAAAAAACAGAGTAATCCTCCTCAAGTCAGAGAAAGCT
CTTCATTGATGGATTTAGTTAGCGCAGCAGCCCAAGAATTGAAACAGTCTAAAAGCTCATCTCCGCACATTCAGACAAAC
ACTGCCTCGCAACCCTTTAATAAGTCTATAACATCTATACAGCGTGAAGCAGCACTTAAAATATTGAGTATGCATAAAGA
AGGCATTAGAGGGGCAAGTCTTCGCAACGAGATTGAAAAAGAAACAGGCATGAAAGTTAAAAATATGACAGCTTTTATGA
GCGGGCTCATGAAACACCATCCTGAAGTAAAGAAGCCAGGACGCGGTCATTATATTATTAAGCATGAAAAGTCCTTTGAG
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

42.077

100

0.481

Multiple sequence alignment