Detailed information NTG0108517

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: C645_RS03370
• Genome accession: NZ_CP008740
• Coordinates: 646798..647802 (+)
• Length: 334 a.a.
• NCBI ID: WP_005688661.1
• Uniprot ID: -
• Organism: Haemophilus influenzae 2019
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 641798..652802

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C645_RS03345 (C645_03405)	rbsD	641956..642375 (+)	420	WP_005639835.1	D-ribose pyranase	-
C645_RS03350 (C645_03410)	rbsA	642389..643870 (+)	1482	WP_005688670.1	ribose ABC transporter ATP-binding protein RbsA	-
C645_RS03355 (C645_03415)	rbsC	643886..644854 (+)	969	WP_005688667.1	ribose ABC transporter permease	-
C645_RS03360 (C645_03420)	rbsB	644874..645752 (+)	879	WP_005688665.1	ribose ABC transporter substrate-binding protein RbsB	-
C645_RS03365 (C645_03425)	rbsK	645850..646770 (+)	921	WP_046067625.1	ribokinase	-
C645_RS03370 (C645_03430)	cytR	646798..647802 (+)	1005	WP_005688661.1	substrate-binding domain-containing protein	Regulator
C645_RS03375 (C645_03435)	-	647912..648463 (+)	552	WP_005632696.1	TIGR00645 family protein	-
C645_RS03380 (C645_03440)	rraA	648595..649083 (-)	489	WP_005688658.1	ribonuclease E activity regulator RraA	-
C645_RS03385 (C645_03445)	menA	649135..650046 (-)	912	WP_005688656.1	1,4-dihydroxy-2-naphthoate octaprenyltransferase	-
C645_RS03390 (C645_03450)	tsaA	650108..650827 (+)	720	WP_005688654.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
C645_RS03395 (C645_03455)	tehA	650882..651826 (-)	945	WP_005688652.1	dicarboxylate transporter/tellurite-resistance protein TehA	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36788.46 Da
• Isoelectric Point: 7.6607

>NTDB_id=108517 C645_RS03370 WP_005688661.1 646798..647802(+) (cytR) [Haemophilus influenzae 2019]
MATMKDIARLAQVSTSTVSHVINGSRFVSDEIREKVMRIVAELNYTPSAVARSLKVRETKTIGLLVTATNNPFFAEVMAG
VEQYCQQHQYNLIIATTGGDAKRLQQNLQTLMHKQVDGLLLMCGDSRFQADIELTISLPLVVMDWWFTELNADKILENSA
LGGYLATKALIDAGHRKIGIITGNLKKSVAQNRLQGYKNALSEAKIALNPHWIVESHFDFEGGVLGIQSLLTQSSRPTAV
FCCSDTIAVGAYQAIQQQGLRIPQDLSIMGYDDIELARYLSPPLSTICQPKAELGKLAVEALLQRIKNPNENYRTLVLEP
TCILRGSISTPSNI

Nucleotide

• Length: 1005 bp

>NTDB_id=108517 C645_RS03370 WP_005688661.1 646798..647802(+) (cytR) [Haemophilus influenzae 2019]
ATGGCGACAATGAAAGATATTGCACGACTGGCGCAAGTTTCGACTTCTACAGTTTCACATGTCATTAATGGATCGCGTTT
TGTTAGCGATGAAATTCGTGAGAAAGTGATGCGTATTGTCGCTGAACTGAATTACACCCCCTCAGCTGTTGCACGAAGTC
TTAAGGTGCGAGAAACCAAAACTATCGGGCTACTTGTCACCGCAACAAATAATCCATTCTTTGCGGAAGTGATGGCTGGC
GTGGAGCAATATTGTCAGCAGCATCAATATAATCTTATTATTGCCACCACTGGTGGCGATGCCAAACGCCTACAACAAAA
TCTGCAAACTCTAATGCACAAACAAGTGGATGGTTTGCTGTTGATGTGTGGTGATAGCCGTTTTCAGGCTGATATAGAGT
TAACCATTTCGCTGCCACTCGTTGTGATGGACTGGTGGTTTACTGAATTAAATGCAGATAAAATACTCGAAAATTCAGCA
CTTGGTGGCTATTTGGCGACAAAAGCATTAATTGATGCAGGACATCGTAAAATTGGCATTATTACGGGAAATCTCAAAAA
ATCTGTCGCACAAAATCGTTTGCAAGGTTATAAAAATGCGCTGTCGGAAGCAAAAATTGCGTTAAATCCTCATTGGATTG
TCGAAAGTCATTTTGACTTTGAAGGCGGTGTCCTTGGTATACAATCTTTACTTACTCAATCTTCACGTCCAACAGCAGTT
TTTTGTTGTAGTGACACCATTGCTGTTGGTGCATACCAAGCTATTCAGCAACAAGGCTTACGTATTCCGCAAGATCTTTC
AATTATGGGCTATGATGACATTGAATTGGCTCGTTATCTCTCACCTCCCCTTTCCACCATTTGCCAACCGAAAGCTGAAC
TTGGCAAACTTGCTGTAGAAGCACTATTGCAACGAATTAAAAATCCTAATGAAAATTACCGCACTTTAGTGTTAGAGCCG
ACCTGTATTTTGAGAGGATCAATTTCTACCCCTTCAAACATATAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	37.048	99.401	0.368
cytR	Vibrio cholerae C6706	36.228	100	0.362