Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C645_RS03300 Genome accession   NZ_CP008740
Coordinates   633381..633884 (+) Length   167 a.a.
NCBI ID   WP_005656552.1    Uniprot ID   A0ABY1VU34
Organism   Haemophilus influenzae 2019     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 628381..638884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C645_RS03260 (C645_03320) atpF 628594..629064 (-) 471 WP_005688696.1 F0F1 ATP synthase subunit B -
  C645_RS03265 (C645_03325) atpE 629114..629368 (-) 255 WP_005629249.1 F0F1 ATP synthase subunit C -
  C645_RS03270 (C645_03330) atpB 629423..630211 (-) 789 WP_005688692.1 F0F1 ATP synthase subunit A -
  C645_RS03275 (C645_03335) - 630239..630613 (-) 375 WP_005688689.1 ATP synthase subunit I -
  C645_RS03280 (C645_03340) rsmG 630732..631343 (-) 612 WP_005688687.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  C645_RS03285 (C645_03345) - 631483..631860 (-) 378 WP_005652029.1 PRD domain-containing protein -
  C645_RS03290 (C645_03350) - 631976..632578 (+) 603 WP_005688685.1 beta-phosphoglucomutase family hydrolase -
  C645_RS03295 (C645_03355) - 632578..633051 (+) 474 WP_005656551.1 YqaA family protein -
  C645_RS03300 (C645_03360) luxS 633381..633884 (+) 504 WP_005656552.1 S-ribosylhomocysteine lyase Regulator
  C645_RS10390 (C645_03365) - 634196..634384 (+) 189 WP_005666448.1 hypothetical protein -
  C645_RS10580 (C645_03370) - 634381..634686 (+) 306 WP_005688682.1 IS3 family transposase -
  C645_RS10585 - 634669..634781 (+) 113 Protein_625 IS3 family transposase -
  C645_RS03315 (C645_03375) aphA 634828..635535 (-) 708 WP_005630577.1 acid phosphatase AphA -
  C645_RS03320 (C645_03380) hslV 635756..636283 (+) 528 WP_005652018.1 ATP-dependent protease subunit HslV -
  C645_RS03325 (C645_03385) hslU 636294..637628 (+) 1335 WP_005688679.1 HslU--HslV peptidase ATPase subunit -
  C645_RS03330 (C645_03390) - 637698..638750 (-) 1053 WP_005688677.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18528.19 Da        Isoelectric Point: 4.8168

>NTDB_id=108516 C645_RS03300 WP_005656552.1 633381..633884(+) (luxS) [Haemophilus influenzae 2019]
MPLLDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=108516 C645_RS03300 WP_005656552.1 633381..633884(+) (luxS) [Haemophilus influenzae 2019]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGCTCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737

Multiple sequence alignment