Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACLIMB_RS21015 Genome accession   NZ_CP177044
Coordinates   4714427..4715380 (-) Length   317 a.a.
NCBI ID   WP_119847376.1    Uniprot ID   A0A385TI71
Organism   Paenibacillus lautus strain MPB09     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4709427..4720380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMB_RS20995 (ACLIMB_20995) - 4709949..4711373 (-) 1425 WP_404565157.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  ACLIMB_RS21000 (ACLIMB_21000) - 4711555..4712526 (-) 972 WP_119847378.1 siderophore ABC transporter substrate-binding protein -
  ACLIMB_RS21005 (ACLIMB_21005) - 4712735..4713493 (-) 759 WP_009589818.1 ABC transporter ATP-binding protein -
  ACLIMB_RS21010 (ACLIMB_21010) - 4713490..4714437 (-) 948 WP_119847377.1 iron chelate uptake ABC transporter family permease subunit -
  ACLIMB_RS21015 (ACLIMB_21015) ceuB 4714427..4715380 (-) 954 WP_119847376.1 ABC transporter permease Machinery gene
  ACLIMB_RS21020 (ACLIMB_21020) - 4715901..4716503 (+) 603 WP_009589776.1 nitroreductase family protein -
  ACLIMB_RS21025 (ACLIMB_21025) - 4716879..4717481 (+) 603 WP_411551824.1 YkoF family thiamine/hydroxymethylpyrimidine-binding protein -
  ACLIMB_RS21030 (ACLIMB_21030) - 4717555..4717650 (-) 96 WP_015736424.1 hypothetical protein -
  ACLIMB_RS21035 (ACLIMB_21035) - 4717777..4718475 (-) 699 WP_411551825.1 nucleotidyltransferase domain-containing protein -
  ACLIMB_RS21040 (ACLIMB_21040) - 4718618..4719340 (+) 723 WP_411551827.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.36 Da        Isoelectric Point: 9.9368

>NTDB_id=1085154 ACLIMB_RS21015 WP_119847376.1 4714427..4715380(-) (ceuB) [Paenibacillus lautus strain MPB09]
MKIRYLFAAVVVLSIISLFIGVKDISPLELFSMTEQQQHIMLVSRIPRLVSLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFTTSGPLIKMLVAFVFALAGTFIFMKILDRIKFKDAIFIPLVGLMFGNIVSSVATFFAYKYDLI
QNMSAWLQGDFSMIMKGQYEMLYISIPLVILAYLFANKFTVAGMGEEFATNLGLHYRRVVNLGLVIVALVTASVVLTVGV
IPFLGLIIPNIVSLYLGDHLKKSLSHTALLGAGFVLFCDILGRIIIYPYEIPISLTVGVLGSGIFIFLLMRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1085154 ACLIMB_RS21015 WP_119847376.1 4714427..4715380(-) (ceuB) [Paenibacillus lautus strain MPB09]
ATGAAGATTAGATACTTATTCGCAGCCGTTGTGGTACTCTCCATAATCTCGTTATTTATTGGAGTTAAAGATATCTCGCC
ACTGGAACTGTTCTCGATGACAGAACAACAACAGCATATTATGCTTGTAAGCCGGATTCCACGGCTTGTCAGCCTCATAT
TGGCGGGTGTCAGCATGAGTATCTGCGGCTTGATCATGCAGCAGCTCAGCCGCAACAAGTTCGTATCGCCGACCACGGCG
GGCACCATGGACTCCGCCAGGTTGGGGATCCTGGTCGCCATGCTCGTCTTTACGACAAGCGGACCGCTGATCAAAATGCT
CGTGGCATTCGTATTCGCGCTAGCAGGAACCTTTATCTTCATGAAGATACTGGACCGGATCAAGTTCAAGGACGCGATCT
TCATCCCGCTGGTAGGGCTTATGTTCGGTAATATCGTCAGTTCGGTCGCGACCTTCTTTGCATACAAATATGATCTTATA
CAGAACATGTCGGCTTGGCTTCAGGGCGATTTCTCCATGATCATGAAGGGCCAATATGAAATGCTCTATATCAGTATTCC
GCTTGTGATTTTGGCCTACCTGTTTGCCAACAAGTTTACGGTAGCCGGCATGGGAGAGGAATTCGCAACCAACCTGGGAC
TTCATTATCGGCGAGTCGTGAACCTCGGACTGGTCATCGTTGCGCTGGTCACGGCTTCCGTTGTGCTGACCGTCGGCGTC
ATTCCGTTCCTCGGTCTGATCATACCTAATATTGTCAGTCTGTACTTAGGGGACCACTTGAAAAAAAGCCTTTCGCATAC
CGCGCTGCTGGGGGCCGGGTTCGTACTGTTCTGTGACATCCTTGGCCGGATCATCATTTATCCCTACGAAATTCCGATTA
GTCTGACCGTGGGCGTACTCGGAAGCGGTATATTCATTTTCTTACTGATGAGGAGAAAGGCTTATGACTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385TI71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.286

99.369

0.539

Multiple sequence alignment