Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C645_RS03060 Genome accession   NZ_CP008740
Coordinates   588642..589244 (+) Length   200 a.a.
NCBI ID   WP_005656473.1    Uniprot ID   -
Organism   Haemophilus influenzae 2019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 583642..594244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C645_RS03045 (C645_03100) - 584518..587112 (+) 2595 WP_005656471.1 penicillin-binding protein 1A -
  C645_RS03050 (C645_03105) - 587185..588030 (+) 846 WP_005656472.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  C645_RS03055 (C645_03110) - 588183..588512 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  C645_RS03060 (C645_03115) recR 588642..589244 (+) 603 WP_005656473.1 recombination mediator RecR Machinery gene
  C645_RS03065 (C645_03120) - 589260..591215 (+) 1956 WP_005659784.1 DNA topoisomerase III -
  C645_RS03070 (C645_03125) secG 591324..591665 (+) 342 WP_005659782.1 preprotein translocase subunit SecG -
  C645_RS03080 (C645_03135) - 592211..593881 (-) 1671 WP_005688724.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22098.22 Da        Isoelectric Point: 6.3716

>NTDB_id=108513 C645_RS03060 WP_005656473.1 588642..589244(+) (recR) [Haemophilus influenzae 2019]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQQNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=108513 C645_RS03060 WP_005656473.1 588642..589244(+) (recR) [Haemophilus influenzae 2019]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCTGGCGTAGGGCCTAAATCGGCGCAACG
TATGGCTTATCATCTTTTACAGCGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGCCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACACTTATCGCCACTTGATGGTATTGGACCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAACCCAACTGTGGAAGGCGATGCAACAGCAAATTACATCGCTGAAATG
TGCCGCCAACAAAATATCAAAGTGAGTCGTATCGCTCATGGTATTCCTGTCGGTGGGGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment