Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACLIMA_RS17725 Genome accession   NZ_CP177039
Coordinates   3334659..3335297 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus licheniformis strain MPB04     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3329659..3340297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMA_RS17690 (ACLIMA_17690) - 3330846..3331277 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  ACLIMA_RS17695 (ACLIMA_17695) - 3331277..3331618 (+) 342 WP_003184836.1 Na(+)/H(+) antiporter subunit C -
  ACLIMA_RS17700 (ACLIMA_17700) - 3331611..3333089 (+) 1479 WP_003184838.1 Na+/H+ antiporter subunit D -
  ACLIMA_RS17705 (ACLIMA_17705) - 3333095..3333571 (+) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  ACLIMA_RS17710 (ACLIMA_17710) - 3333571..3333855 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  ACLIMA_RS17715 (ACLIMA_17715) mnhG 3333839..3334213 (+) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  ACLIMA_RS17720 (ACLIMA_17720) - 3334253..3334642 (-) 390 WP_003184847.1 hotdog fold thioesterase -
  ACLIMA_RS17725 (ACLIMA_17725) comA 3334659..3335297 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  ACLIMA_RS17730 (ACLIMA_17730) - 3335384..3337704 (-) 2321 Protein_3440 ATP-binding protein -
  ACLIMA_RS17735 (ACLIMA_17735) comX 3337744..3337908 (-) 165 WP_011198251.1 competence pheromone ComX -
  ACLIMA_RS17740 (ACLIMA_17740) - 3337923..3338792 (-) 870 WP_011198252.1 polyprenyl synthetase family protein -
  ACLIMA_RS17745 (ACLIMA_17745) degQ 3338981..3339121 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  ACLIMA_RS17750 (ACLIMA_17750) - 3339607..3339954 (+) 348 WP_009329512.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=1085073 ACLIMA_RS17725 WP_003184849.1 3334659..3335297(-) (comA) [Bacillus licheniformis strain MPB04]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=1085073 ACLIMA_RS17725 WP_003184849.1 3334659..3335297(-) (comA) [Bacillus licheniformis strain MPB04]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACATGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTTCTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGT
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGACCTCTTGACTGAAAGGGAATGCCTGATTTTA
AAAGAAGTCGAAAAAGGCTACACAAATCAGGAAATTGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGCTT
GACTTCCGTATTCAGCAAGCTGAATGTAGGATCAAGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGTGTACTCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778

Multiple sequence alignment