Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACLIMA_RS14050 Genome accession   NZ_CP177039
Coordinates   2656514..2656849 (+) Length   111 a.a.
NCBI ID   WP_025804940.1    Uniprot ID   A0AB37GFT9
Organism   Bacillus licheniformis strain MPB04     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2651514..2661849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMA_RS14030 (ACLIMA_14030) gcvT 2651946..2653040 (-) 1095 WP_003183436.1 glycine cleavage system aminomethyltransferase GcvT -
  ACLIMA_RS14035 (ACLIMA_14035) - 2653633..2655312 (+) 1680 WP_003183439.1 DEAD/DEAH box helicase -
  ACLIMA_RS14040 (ACLIMA_14040) - 2655319..2656113 (+) 795 WP_003183441.1 YqhG family protein -
  ACLIMA_RS14045 (ACLIMA_14045) sinI 2656304..2656480 (+) 177 WP_003183444.1 anti-repressor SinI Regulator
  ACLIMA_RS14050 (ACLIMA_14050) sinR 2656514..2656849 (+) 336 WP_025804940.1 transcriptional regulator SinR Regulator
  ACLIMA_RS14055 (ACLIMA_14055) tasA 2656954..2657748 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  ACLIMA_RS14060 (ACLIMA_14060) sipW 2657822..2658406 (-) 585 WP_003183449.1 signal peptidase I SipW -
  ACLIMA_RS14065 (ACLIMA_14065) tapA 2658403..2659131 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  ACLIMA_RS14070 (ACLIMA_14070) - 2659408..2659728 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  ACLIMA_RS14075 (ACLIMA_14075) - 2659752..2659934 (-) 183 WP_003183456.1 YqzE family protein -
  ACLIMA_RS14080 (ACLIMA_14080) comGG 2660023..2660388 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  ACLIMA_RS14085 (ACLIMA_14085) comGF 2660401..2660889 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  ACLIMA_RS14090 (ACLIMA_14090) comGE 2660798..2661145 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  ACLIMA_RS14095 (ACLIMA_14095) comGD 2661129..2661566 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12991.60 Da        Isoelectric Point: 5.9495

>NTDB_id=1085059 ACLIMA_RS14050 WP_025804940.1 2656514..2656849(+) (sinR) [Bacillus licheniformis strain MPB04]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKRRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1085059 ACLIMA_RS14050 WP_025804940.1 2656514..2656849(+) (sinR) [Bacillus licheniformis strain MPB04]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAGAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment