Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACLIMA_RS12735 Genome accession   NZ_CP177039
Coordinates   2417186..2417782 (+) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus licheniformis strain MPB04     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2412186..2422782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMA_RS12695 (ACLIMA_12695) - 2412338..2412757 (+) 420 WP_003182880.1 hypothetical protein -
  ACLIMA_RS12700 (ACLIMA_12700) - 2412776..2413219 (-) 444 WP_017473947.1 YppG family protein -
  ACLIMA_RS12705 (ACLIMA_12705) - 2413399..2413599 (+) 201 WP_011198064.1 YppF family protein -
  ACLIMA_RS12710 (ACLIMA_12710) - 2413648..2415078 (-) 1431 WP_026699437.1 IS1182 family transposase -
  ACLIMA_RS12715 (ACLIMA_12715) - 2415180..2415551 (-) 372 WP_003182887.1 YppE family protein -
  ACLIMA_RS12720 (ACLIMA_12720) - 2415609..2415836 (-) 228 WP_003182890.1 YppD family protein -
  ACLIMA_RS12725 (ACLIMA_12725) sspM 2416036..2416140 (+) 105 WP_009328007.1 acid-soluble spore protein SspM -
  ACLIMA_RS12730 (ACLIMA_12730) - 2416173..2417132 (-) 960 WP_003182894.1 DUF2515 domain-containing protein -
  ACLIMA_RS12735 (ACLIMA_12735) recU 2417186..2417782 (+) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  ACLIMA_RS12740 (ACLIMA_12740) - 2417840..2420527 (+) 2688 WP_017473945.1 penicillin-binding protein 1A -
  ACLIMA_RS12745 (ACLIMA_12745) - 2420548..2421051 (-) 504 WP_003182901.1 YpoC family protein -
  ACLIMA_RS12750 (ACLIMA_12750) nth 2421048..2421710 (-) 663 WP_003182903.1 endonuclease III -
  ACLIMA_RS12755 (ACLIMA_12755) - 2421727..2422425 (-) 699 WP_003182905.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=1085055 ACLIMA_RS12735 WP_003182896.1 2417186..2417782(+) (recU) [Bacillus licheniformis strain MPB04]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1085055 ACLIMA_RS12735 WP_003182896.1 2417186..2417782(+) (recU) [Bacillus licheniformis strain MPB04]
GTGATTCGTTACCCGAACGGCAAATCCTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACACCTGTACAGATTGTCCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTTATCAAAGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACAAAGAGCCGAACCTC
GTTCCCGCTTCAGAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833

Multiple sequence alignment