Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ACLIMA_RS12290 Genome accession   NZ_CP177039
Coordinates   2340804..2341286 (-) Length   160 a.a.
NCBI ID   WP_048349895.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MPB04     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2335804..2346286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMA_RS12250 (ACLIMA_12250) - 2335950..2336336 (+) 387 WP_016886002.1 hypothetical protein -
  ACLIMA_RS12255 (ACLIMA_12255) - 2336355..2336609 (+) 255 WP_021837857.1 phage holin -
  ACLIMA_RS12260 (ACLIMA_12260) - 2336628..2336927 (+) 300 WP_048349897.1 hypothetical protein -
  ACLIMA_RS12265 (ACLIMA_12265) - 2337127..2337213 (+) 87 WP_219993970.1 putative holin-like toxin -
  ACLIMA_RS12270 (ACLIMA_12270) - 2337647..2337775 (-) 129 WP_021837855.1 hypothetical protein -
  ACLIMA_RS12275 (ACLIMA_12275) - 2337772..2338872 (-) 1101 WP_080623910.1 tetratricopeptide repeat protein -
  ACLIMA_RS12280 (ACLIMA_12280) - 2338984..2340240 (-) 1257 WP_048349896.1 MFS transporter -
  ACLIMA_RS12285 (ACLIMA_12285) - 2340381..2340734 (-) 354 WP_026579425.1 hypothetical protein -
  ACLIMA_RS12290 (ACLIMA_12290) rok 2340804..2341286 (-) 483 WP_048349895.1 hypothetical protein Regulator
  ACLIMA_RS12295 (ACLIMA_12295) - 2341396..2341971 (-) 576 WP_048349894.1 SMI1/KNR4 family protein -
  ACLIMA_RS12300 (ACLIMA_12300) - 2342064..2342537 (-) 474 WP_057957858.1 SMI1/KNR4 family protein -
  ACLIMA_RS12305 (ACLIMA_12305) - 2342578..2343000 (-) 423 WP_048350255.1 SMI1/KNR4 family protein -
  ACLIMA_RS12310 (ACLIMA_12310) - 2343205..2343654 (-) 450 WP_048350256.1 SMI1/KNR4 family protein -
  ACLIMA_RS12315 (ACLIMA_12315) - 2343651..2345582 (-) 1932 WP_411469448.1 T7SS effector LXG polymorphic toxin -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18413.18 Da        Isoelectric Point: 10.3708

>NTDB_id=1085054 ACLIMA_RS12290 WP_048349895.1 2340804..2341286(-) (rok) [Bacillus licheniformis strain MPB04]
MFNEREALRLRLEQLNDKEIIVMRELREEREGIYSKLRELDKKQSNPPQVRESSSLMDLVSAAAQELKQSKSSSPHIQTN
TASQPFNKSITSIQREAALKILSMHKEGIRGASLRNEIEKETGMKVKNMTAFMSGLMKHHPEVKKPGRGHYIIKHEKSFE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1085054 ACLIMA_RS12290 WP_048349895.1 2340804..2341286(-) (rok) [Bacillus licheniformis strain MPB04]
ATGTTTAATGAGCGAGAGGCGTTACGCTTGAGGCTTGAGCAGCTAAACGATAAAGAAATTATTGTCATGAGAGAACTTAG
AGAAGAACGAGAAGGTATTTATTCAAAGTTGCGTGAGTTGGACAAAAAACAGAGTAATCCTCCTCAAGTCAGAGAAAGCT
CTTCATTGATGGATTTAGTTAGCGCAGCAGCCCAAGAATTGAAACAGTCTAAAAGCTCATCTCCGCACATTCAGACAAAC
ACTGCCTCGCAACCCTTTAATAAGTCTATAACATCTATACAGCGTGAAGCAGCACTTAAAATATTGAGTATGCATAAAGA
AGGCATTAGAGGGGCAAGTCTTCGCAACGAGATTGAAAAAGAAACAGGCATGAAAGTTAAAAATATGACAGCTTTTATGA
GCGGGCTCATGAAACACCATCCTGAAGTAAAGAAGCCAGGACGCGGTCATTATATTATTAAGCATGAAAAGTCCTTTGAG
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

42.077

100

0.481

Multiple sequence alignment