Detailed information    

insolico Bioinformatically predicted

Overview


Name   kre   Type   Regulator
Locus tag   ACLIMA_RS08055 Genome accession   NZ_CP177039
Coordinates   1553163..1553624 (-) Length   153 a.a.
NCBI ID   WP_003181285.1    Uniprot ID   A0A1Y0YEG4
Organism   Bacillus licheniformis strain MPB04     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context


Location: 1548163..1558624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMA_RS08030 (ACLIMA_08030) - 1548499..1549679 (-) 1181 Protein_1531 aminotransferase A -
  ACLIMA_RS08035 (ACLIMA_08035) - 1549871..1550029 (-) 159 WP_016885792.1 hypothetical protein -
  ACLIMA_RS08040 (ACLIMA_08040) - 1550201..1550725 (+) 525 WP_003181280.1 RDD family protein -
  ACLIMA_RS08045 (ACLIMA_08045) - 1550822..1552141 (+) 1320 WP_003181282.1 MFS transporter -
  ACLIMA_RS08050 (ACLIMA_08050) - 1552215..1553132 (+) 918 WP_003181284.1 chemotaxis protein -
  ACLIMA_RS08055 (ACLIMA_08055) kre 1553163..1553624 (-) 462 WP_003181285.1 YkyB family protein Regulator
  ACLIMA_RS08060 (ACLIMA_08060) - 1553766..1555067 (-) 1302 WP_003181287.1 MFS transporter -
  ACLIMA_RS08065 (ACLIMA_08065) - 1555156..1555653 (-) 498 WP_003181289.1 L,D-transpeptidase family protein -
  ACLIMA_RS08070 (ACLIMA_08070) - 1555833..1556690 (-) 858 WP_003181293.1 metallophosphoesterase -
  ACLIMA_RS08075 (ACLIMA_08075) fadH 1556836..1557600 (+) 765 WP_003181295.1 2,4-dienoyl-CoA reductase -

Sequence


Protein


Download         Length: 153 a.a.        Molecular weight: 17600.40 Da        Isoelectric Point: 10.6730

>NTDB_id=1085045 ACLIMA_RS08055 WP_003181285.1 1553163..1553624(-) (kre) [Bacillus licheniformis strain MPB04]
MDDHNHTKELKPTVENLSKAIYTVNRHAKTATNPKYLYLLKKKALQKLLNEGKGKKVGLHFSKNPRFSQQQSDVLISLGD
YFFHMPPTKEDFANLPHLGTLNHSYRNPKAHMSLNIAKQLLQNYTGIKEKPLVTNRKRPASKPVFKKLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1085045 ACLIMA_RS08055 WP_003181285.1 1553163..1553624(-) (kre) [Bacillus licheniformis strain MPB04]
ATGGACGACCATAATCATACGAAAGAATTAAAACCGACAGTTGAAAACCTTTCAAAAGCGATTTATACAGTTAACCGCCA
TGCGAAAACCGCGACTAATCCCAAATACCTGTATCTTCTGAAAAAGAAAGCTTTGCAAAAGCTGCTTAATGAAGGAAAAG
GTAAAAAGGTAGGCCTGCATTTTTCGAAAAATCCAAGATTCAGCCAGCAGCAGTCAGATGTGCTGATATCTCTCGGAGAC
TACTTTTTTCACATGCCTCCAACAAAAGAAGACTTCGCAAACCTTCCACACTTAGGTACATTAAATCATTCGTATCGGAA
CCCTAAAGCTCATATGTCCTTGAATATAGCGAAACAGCTTCTTCAAAACTACACGGGAATCAAAGAAAAACCGCTCGTCA
CAAACCGGAAGCGTCCAGCCTCAAAACCCGTCTTCAAGAAGCTTGGCGAAAGCTATTTTTAA

Domains


Predicted by InterproScan.

(14-128)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1Y0YEG4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

82.468

100

0.83


Multiple sequence alignment