Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   ACLAIW_RS02225 Genome accession   NZ_CP176964
Coordinates   417723..418319 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain LAhvKp232     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 412723..423319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLAIW_RS02210 (ACLAIW_02210) helD 412931..414985 (-) 2055 WP_014907883.1 DNA helicase IV -
  ACLAIW_RS02215 (ACLAIW_02215) - 415110..415556 (+) 447 WP_014907884.1 YccF domain-containing protein -
  ACLAIW_RS02220 (ACLAIW_02220) yccS 415574..417709 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ACLAIW_RS02225 (ACLAIW_02225) sxy/tfoX 417723..418319 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACLAIW_RS02230 (ACLAIW_02230) - 418410..418625 (+) 216 WP_009485781.1 hypothetical protein -
  ACLAIW_RS02235 (ACLAIW_02235) sulA 418668..419177 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACLAIW_RS02240 (ACLAIW_02240) ompA 419530..420600 (+) 1071 WP_002898408.1 porin OmpA -
  ACLAIW_RS02245 (ACLAIW_02245) matP 420732..421184 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACLAIW_RS02250 (ACLAIW_02250) - 421370..423127 (+) 1758 WP_014907886.1 Lon protease family protein -

Sequence


Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1084459 ACLAIW_RS02225 WP_004179217.1 417723..418319(-) (sxy/tfoX) [Klebsiella pneumoniae strain LAhvKp232]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1084459 ACLAIW_RS02225 WP_004179217.1 417723..418319(-) (sxy/tfoX) [Klebsiella pneumoniae strain LAhvKp232]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51


Multiple sequence alignment