Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   ACLAIR_RS08775 Genome accession   NZ_CP176954
Coordinates   1775852..1776448 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain LAhvKp179     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 1770852..1781448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLAIR_RS08760 (ACLAIR_08760) helD 1771060..1773114 (-) 2055 WP_411548186.1 DNA helicase IV -
  ACLAIR_RS08765 (ACLAIR_08765) - 1773239..1773685 (+) 447 WP_014907884.1 YccF domain-containing protein -
  ACLAIR_RS08770 (ACLAIR_08770) yccS 1773703..1775838 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ACLAIR_RS08775 (ACLAIR_08775) sxy/tfoX 1775852..1776448 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACLAIR_RS08780 (ACLAIR_08780) - 1776539..1776754 (+) 216 WP_009485781.1 hypothetical protein -
  ACLAIR_RS08785 (ACLAIR_08785) sulA 1776797..1777306 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACLAIR_RS08790 (ACLAIR_08790) ompA 1777659..1778729 (+) 1071 WP_002898408.1 porin OmpA -
  ACLAIR_RS08795 (ACLAIR_08795) matP 1778861..1779313 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACLAIR_RS08800 (ACLAIR_08800) - 1779499..1781256 (+) 1758 WP_014907886.1 Lon protease family protein -

Sequence


Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1084368 ACLAIR_RS08775 WP_004179217.1 1775852..1776448(-) (sxy/tfoX) [Klebsiella pneumoniae strain LAhvKp179]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1084368 ACLAIR_RS08775 WP_004179217.1 1775852..1776448(-) (sxy/tfoX) [Klebsiella pneumoniae strain LAhvKp179]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51


Multiple sequence alignment