Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | ABUW_RS03190 | Genome accession | NZ_CP008706 |
| Coordinates | 653328..653843 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain AB5075-UW | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 648328..658843
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUW_RS03165 (ABUW_0643) | - | 648874..650517 (+) | 1644 | WP_000281764.1 | nitrite/sulfite reductase | - |
| ABUW_RS03170 (ABUW_0644) | - | 650510..650995 (+) | 486 | WP_000935247.1 | DUF934 domain-containing protein | - |
| ABUW_RS03175 (ABUW_0645) | - | 651078..651431 (+) | 354 | WP_000457783.1 | multidrug efflux SMR transporter | - |
| ABUW_RS03180 (ABUW_0646) | - | 651474..651917 (-) | 444 | WP_001176585.1 | VOC family protein | - |
| ABUW_RS03185 (ABUW_0647) | - | 652044..653219 (-) | 1176 | WP_000129968.1 | thiolase family protein | - |
| ABUW_RS03190 (ABUW_0648) | fimT | 653328..653843 (-) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| ABUW_RS03195 (ABUW_0649) | omp38 | 654223..655284 (+) | 1062 | WP_000777885.1 | outer membrane protein Omp38 | - |
| ABUW_RS20425 (ABUW_0650) | - | 655407..655565 (-) | 159 | WP_000692859.1 | hypothetical protein | - |
| ABUW_RS03205 (ABUW_0651) | - | 655569..656774 (-) | 1206 | WP_000512708.1 | RtcB family protein | - |
| ABUW_RS03210 (ABUW_0652) | - | 657052..658512 (-) | 1461 | WP_000004974.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=108433 ABUW_RS03190 WP_000477151.1 653328..653843(-) (fimT) [Acinetobacter baumannii strain AB5075-UW]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=108433 ABUW_RS03190 WP_000477151.1 653328..653843(-) (fimT) [Acinetobacter baumannii strain AB5075-UW]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |