Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABXH22_RS01665 Genome accession   NZ_AP029613
Coordinates   372068..373588 (-) Length   506 a.a.
NCBI ID   WP_318225125.1    Uniprot ID   -
Organism   Paraburkholderia terrae strain KU-46     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 367068..378588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH22_RS01640 (PTKU46_03250) - 367835..368470 (-) 636 WP_042306311.1 LON peptidase substrate-binding domain-containing protein -
  ABXH22_RS01645 (PTKU46_03260) rapZ 368535..369428 (-) 894 WP_091777788.1 RNase adapter RapZ -
  ABXH22_RS01650 (PTKU46_03270) hprK 369506..370474 (-) 969 WP_007579699.1 HPr(Ser) kinase/phosphatase -
  ABXH22_RS01655 (PTKU46_03280) - 370717..371232 (-) 516 WP_035538101.1 PTS sugar transporter subunit IIA -
  ABXH22_RS01660 (PTKU46_03290) raiA 371533..371892 (-) 360 WP_007579701.1 ribosome-associated translation inhibitor RaiA -
  ABXH22_RS01665 (PTKU46_03300) rpoN/rpoN1 372068..373588 (-) 1521 WP_318225125.1 RNA polymerase factor sigma-54 Machinery gene
  ABXH22_RS01670 (PTKU46_03310) lptB 373830..374612 (-) 783 WP_091777784.1 LPS export ABC transporter ATP-binding protein -
  ABXH22_RS01675 (PTKU46_03320) lptA 374609..375286 (-) 678 WP_091777781.1 lipopolysaccharide transport periplasmic protein LptA -
  ABXH22_RS01680 (PTKU46_03330) lptC 375308..375913 (-) 606 WP_042306305.1 LPS export ABC transporter periplasmic protein LptC -
  ABXH22_RS01685 (PTKU46_03340) - 375910..376470 (-) 561 WP_007579706.1 HAD family hydrolase -
  ABXH22_RS01690 (PTKU46_03350) kdsD 376470..377453 (-) 984 WP_007579707.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55640.48 Da        Isoelectric Point: 4.8796

>NTDB_id=108411 ABXH22_RS01665 WP_318225125.1 372068..373588(-) (rpoN/rpoN1) [Paraburkholderia terrae strain KU-46]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVSMAISQNPLLETEDDWIASPLRVAADGTVISQTSQNTSPEGMS
SSPPSSSSSSSSSESQEGGEPQGVDEYNGMGSDSNSDANQWNLDDYGRSGNASDDDDLPPLQIHESTTTLRDHLTAQLRV
TGASARDRALITFLIESLDDDGYLTATFDEILTDLPEELEVDTDELNAALALLHSFDPAGVGARSASECLRLQLCRLEPS
PTRTLALDIVAHHLELLAARDFTRLRKYLKASDDDLREAHALIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELN
PEVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREI
ADTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQG
FVVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=108411 ABXH22_RS01665 WP_318225125.1 372068..373588(-) (rpoN/rpoN1) [Paraburkholderia terrae strain KU-46]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAGCATCTTGCGCTGACACCACAACTGCAACAGTCCATCCGGCTGCTGCA
GCTGTCTACGCTTGAACTGCAGCAGGAAGTGTCGATGGCGATCTCGCAGAATCCGTTGCTCGAAACGGAGGACGACTGGA
TCGCGAGTCCGTTGCGCGTAGCCGCCGACGGCACGGTCATCTCGCAGACGTCGCAGAACACCTCGCCGGAAGGGATGTCG
AGTTCGCCGCCGTCCTCGTCGTCGTCAAGTTCTTCCAGCGAAAGCCAGGAAGGCGGCGAGCCCCAAGGCGTGGACGAATA
CAACGGCATGGGTTCGGACTCGAACTCGGATGCCAACCAGTGGAATCTCGACGACTACGGCCGTTCGGGCAACGCATCGG
ACGACGACGATCTGCCGCCGCTGCAAATCCACGAATCGACCACGACGCTGCGCGATCACCTGACTGCTCAACTTCGTGTA
ACGGGAGCAAGCGCACGCGACCGCGCGCTCATCACGTTCCTGATCGAATCACTCGACGACGACGGCTATCTGACGGCCAC
CTTCGACGAAATCCTCACCGATCTCCCCGAAGAACTGGAAGTCGATACCGACGAACTCAACGCGGCCCTCGCCTTACTGC
ACAGCTTCGACCCAGCGGGCGTCGGCGCACGTTCGGCGTCCGAATGCCTGCGTTTGCAGTTGTGCCGGCTCGAGCCCTCG
CCCACGCGCACGCTCGCGCTCGACATCGTCGCGCATCATCTGGAACTGCTCGCCGCGCGCGACTTCACGCGTCTGCGCAA
ATACCTGAAGGCAAGCGACGACGATCTGCGCGAAGCGCATGCGTTGATCCGCTCGCTGGAGCCATTCCCCGGCGCGGCCT
ACGGCAAGGCCGAAGCGGACTACGTCGTGCCCGACATCATGGTGCGCAAAACGGCACAGGGATGGCAGGCGGAACTGAAT
CCGGAAGTCGTGCCGAAACTGCGTATCAACCATCTGTACGCGAATATCCTGCGCAACAATCGCGGCGATCCGGGCAGCGG
TTCACTGCGGCAGCAACTGCAGGAAGCGCGTTGGCTGATCAAGAATATCCAGCAGCGGTTCGAGACGATCCTGCGTGTCG
CACAGGCAATTGTGGAGCGTCAAAAGAACTTTTTCGCCCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATA
GCTGATACGCTGGGTTTACACGAGTCGACGGTCTCACGTGTGACAACCGGCAAGTACATGCTCACCCCATTCGGGACGCT
TGAATTTAAGTACTTCTTCGGATCGCACGTATCCACCGACACGGGGGGCGCGGCCTCTTCAACGGCCATTCGCGCACTCA
TCAAGCAACTGATAGGAGCGGAAGACACCAAATCTCCTCTTTCAGACAGCCGCATTGCCGAACTGCTGGCGGAACAGGGT
TTCGTCGTCGCTCGCCGTACCGTTGCGAAATACCGCGAAGCACTGAAGATCCCAGCAGTCAATCTGCGCAAGTCTCTTTA
G

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(349-504)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-333)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.798

100

0.668

Multiple sequence alignment