Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACK990_RS08770 Genome accession   NZ_CP176924
Coordinates   1823640..1824236 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain LAhvKp44     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1818640..1829236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK990_RS08750 (ACK990_08750) - 1818833..1820590 (-) 1758 WP_281091535.1 Lon protease family protein -
  ACK990_RS08755 (ACK990_08755) matP 1820776..1821228 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACK990_RS08760 (ACK990_08760) ompA 1821359..1822429 (-) 1071 WP_002898408.1 porin OmpA -
  ACK990_RS08765 (ACK990_08765) sulA 1822782..1823291 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACK990_RS08770 (ACK990_08770) sxy/tfoX 1823640..1824236 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACK990_RS08775 (ACK990_08775) yccS 1824250..1826385 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ACK990_RS08780 (ACK990_08780) - 1826403..1826849 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ACK990_RS08785 (ACK990_08785) helD 1826974..1829028 (+) 2055 WP_014907883.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1084021 ACK990_RS08770 WP_004179217.1 1823640..1824236(+) (sxy/tfoX) [Klebsiella pneumoniae strain LAhvKp44]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1084021 ACK990_RS08770 WP_004179217.1 1823640..1824236(+) (sxy/tfoX) [Klebsiella pneumoniae strain LAhvKp44]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment