Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   ACK99S_RS21200 Genome accession   NZ_CP176916
Coordinates   4354771..4355367 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain LAhvKp31     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 4349771..4360367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK99S_RS21185 (ACK99S_21185) helD 4349979..4352033 (-) 2055 WP_032419808.1 DNA helicase IV -
  ACK99S_RS21190 (ACK99S_21190) - 4352158..4352604 (+) 447 WP_002898425.1 YccF domain-containing protein -
  ACK99S_RS21195 (ACK99S_21195) yccS 4352622..4354757 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ACK99S_RS21200 (ACK99S_21200) sxy/tfoX 4354771..4355367 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACK99S_RS21205 (ACK99S_21205) - 4355458..4355673 (+) 216 WP_009485781.1 hypothetical protein -
  ACK99S_RS21210 (ACK99S_21210) sulA 4355716..4356225 (+) 510 WP_032419807.1 SOS-induced cell division inhibitor SulA -
  ACK99S_RS21215 (ACK99S_21215) ompA 4356578..4357648 (+) 1071 WP_002898408.1 porin OmpA -
  ACK99S_RS21220 (ACK99S_21220) matP 4357780..4358232 (-) 453 WP_032419806.1 macrodomain Ter protein MatP -
  ACK99S_RS21225 (ACK99S_21225) - 4358418..4360175 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence


Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1083966 ACK99S_RS21200 WP_004179217.1 4354771..4355367(-) (sxy/tfoX) [Klebsiella pneumoniae strain LAhvKp31]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1083966 ACK99S_RS21200 WP_004179217.1 4354771..4355367(-) (sxy/tfoX) [Klebsiella pneumoniae strain LAhvKp31]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGTGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51


Multiple sequence alignment