Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACK99L_RS21300 Genome accession   NZ_CP176908
Coordinates   4390248..4390844 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain LAhvKp07     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4385248..4395844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK99L_RS21285 (ACK99L_21285) helD 4385456..4387510 (-) 2055 WP_004179218.1 DNA helicase IV -
  ACK99L_RS21290 (ACK99L_21290) - 4387635..4388081 (+) 447 WP_004224032.1 YccF domain-containing protein -
  ACK99L_RS21295 (ACK99L_21295) yccS 4388099..4390234 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ACK99L_RS21300 (ACK99L_21300) sxy/tfoX 4390248..4390844 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACK99L_RS21305 (ACK99L_21305) sulA 4391193..4391702 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACK99L_RS21310 (ACK99L_21310) ompA 4392055..4393125 (+) 1071 WP_002898408.1 porin OmpA -
  ACK99L_RS21315 (ACK99L_21315) matP 4393257..4393709 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACK99L_RS21320 (ACK99L_21320) - 4393895..4395652 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1083872 ACK99L_RS21300 WP_004179217.1 4390248..4390844(-) (sxy/tfoX) [Klebsiella pneumoniae strain LAhvKp07]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1083872 ACK99L_RS21300 WP_004179217.1 4390248..4390844(-) (sxy/tfoX) [Klebsiella pneumoniae strain LAhvKp07]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment