Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   ACK99K_RS16215 Genome accession   NZ_CP176907
Coordinates   3075438..3076034 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain LAhvKp03     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 3070438..3081034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK99K_RS16200 (ACK99K_16200) helD 3070646..3072700 (-) 2055 WP_014907883.1 DNA helicase IV -
  ACK99K_RS16205 (ACK99K_16205) - 3072825..3073271 (+) 447 WP_014907884.1 YccF domain-containing protein -
  ACK99K_RS16210 (ACK99K_16210) yccS 3073289..3075424 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ACK99K_RS16215 (ACK99K_16215) sxy/tfoX 3075438..3076034 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACK99K_RS16220 (ACK99K_16220) - 3076125..3076340 (+) 216 WP_009485781.1 hypothetical protein -
  ACK99K_RS16225 (ACK99K_16225) sulA 3076383..3076892 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACK99K_RS16230 (ACK99K_16230) ompA 3077245..3078315 (+) 1071 WP_002898408.1 porin OmpA -
  ACK99K_RS16235 (ACK99K_16235) matP 3078447..3078899 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACK99K_RS16240 (ACK99K_16240) - 3079085..3080842 (+) 1758 WP_014907886.1 Lon protease family protein -

Sequence


Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1083840 ACK99K_RS16215 WP_004179217.1 3075438..3076034(-) (sxy/tfoX) [Klebsiella pneumoniae strain LAhvKp03]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1083840 ACK99K_RS16215 WP_004179217.1 3075438..3076034(-) (sxy/tfoX) [Klebsiella pneumoniae strain LAhvKp03]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51


Multiple sequence alignment