Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACLINX_RS09290 Genome accession   NZ_CP176876
Coordinates   2045255..2046622 (-) Length   455 a.a.
NCBI ID   WP_032884669.1    Uniprot ID   A0A031J688
Organism   Pseudomonas orientalis strain MPB27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2040255..2051622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLINX_RS09275 (ACLINX_09275) yjiA 2041566..2042525 (-) 960 WP_191953237.1 GTPase -
  ACLINX_RS09280 (ACLINX_09280) - 2042680..2042877 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  ACLINX_RS09285 (ACLINX_09285) - 2042893..2044959 (-) 2067 WP_057724970.1 carbon starvation CstA family protein -
  ACLINX_RS09290 (ACLINX_09290) radA 2045255..2046622 (-) 1368 WP_032884669.1 DNA repair protein RadA Machinery gene
  ACLINX_RS09295 (ACLINX_09295) - 2046658..2047206 (-) 549 WP_181284580.1 ankyrin repeat domain-containing protein -
  ACLINX_RS09300 (ACLINX_09300) katB 2047345..2048886 (-) 1542 WP_411565800.1 catalase KatB -
  ACLINX_RS09305 (ACLINX_09305) mscL 2049174..2049590 (+) 417 WP_411565801.1 large-conductance mechanosensitive channel protein MscL -
  ACLINX_RS09310 (ACLINX_09310) - 2049633..2050409 (-) 777 WP_181284583.1 ferredoxin--NADP reductase -
  ACLINX_RS09315 (ACLINX_09315) - 2050839..2051549 (+) 711 WP_191955842.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48759.29 Da        Isoelectric Point: 6.8987

>NTDB_id=1083492 ACLINX_RS09290 WP_032884669.1 2045255..2046622(-) (radA) [Pseudomonas orientalis strain MPB27]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1083492 ACLINX_RS09290 WP_032884669.1 2045255..2046622(-) (radA) [Pseudomonas orientalis strain MPB27]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCGGGCCAGTGCGGCGAGTG
CGGTGCGTGGAACACCCTGACTGAAACCATGATTGAAAGCGGTGGCGCCGCAGCCCCCACCGGCCGCGCCGGCTGGACCG
GGCAACAAGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTTGAAGAGATCCCGCGTTTCTCCACGGCCTCCGGTGAGTTG
GACCGGGTATTGGGCGGCGGCCTGGTGGACGGCTCGGTCGTGCTGATCGGCGGTGACCCGGGCATCGGTAAATCCACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGTCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCAGCGCC
TGGCGGCGTGTCCCAGGTGCGTGAAAGCGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCGCGCGTGCTGGAACATATGGTGGACACCGTGCTGTATTTCGAG
GGTGAATCCGATGGCCGCCTGCGGTTGCTGCGGGCGGTGAAAAACCGCTTTGGCGCGGTGAATGAATTGGGTGTGTTTGC
CATGACTGACCGGGGGCTGAAAGAAGTCTCCAACCCCTCGGCAATCTTTCTCACCCGCGCCCAGGAAGAAGTCCCAGGCA
GCGTGGTAATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTAGATGACAGCCATCTGGCC
AACCCGCGGCGGGTCACCCTCGGCCTGGATCAGAACCGCCTGGCCATGCTGTTGGCGGTATTGCATCGCCATGGCGGCAT
TCCGACTCACGATCAGGACGTCTTCCTCAACGTGGTGGGCGGGGTCAAGGTGTTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCATGACTTGCTGGTGTTTGGCGAGGTCGGGCTGTCGGGC
GAAGTGCGCCCGGTGCCCAGCGGCCAGGAGCGCTTGAAAGAGGCGGCCAAGCATGGCTTCAAGCGGGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAAATGCCGCCAGGATTGCAGGTGATTGGGGTCACCCGCCTGGAACAGGCGTTGGATGCACTGT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031J688

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47

Multiple sequence alignment