Detailed information NTG0108348

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: AACH39_RS09635
• Genome accession: NZ_AP029060
• Coordinates: 2017416..2018414 (+)
• Length: 332 a.a.
• NCBI ID: WP_338619764.1
• Uniprot ID: -
• Organism: Paludibacterium sp. THUN1379
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2012416..2023414

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AACH39_RS09585 (THUN1379_18650)	rplK	2013094..2013525 (-)	432	WP_215780501.1	50S ribosomal protein L11	-
AACH39_RS09590 (THUN1379_18660)	nusG	2013625..2014158 (-)	534	WP_215780499.1	transcription termination/antitermination protein NusG	-
AACH39_RS09595 (THUN1379_18670)	secE	2014166..2014519 (-)	354	WP_215780497.1	preprotein translocase subunit SecE	-
AACH39_RS09605 (THUN1379_18680)	tuf	2014674..2015864 (-)	1191	WP_215780495.1	elongation factor Tu	-
AACH39_RS09625 (THUN1379_18690)	-	2016367..2016618 (-)	252	WP_215780493.1	YfhL family 4Fe-4S dicluster ferredoxin	-
AACH39_RS09630 (THUN1379_18700)	rsmD	2016690..2017241 (-)	552	WP_215780490.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
AACH39_RS09635 (THUN1379_18710)	pilA	2017416..2018414 (+)	999	WP_338619764.1	signal recognition particle-docking protein FtsY	Machinery gene
AACH39_RS09640 (THUN1379_18720)	ftsE	2018456..2019109 (+)	654	WP_215780485.1	cell division ATP-binding protein FtsE	-
AACH39_RS09645 (THUN1379_18730)	ftsX	2019106..2020014 (+)	909	WP_215780482.1	permease-like cell division protein FtsX	-
AACH39_RS09650 (THUN1379_18740)	rpoH	2020132..2020983 (+)	852	WP_215780479.1	RNA polymerase sigma factor RpoH	-
AACH39_RS09655 (THUN1379_18750)	-	2021088..2022893 (-)	1806	WP_215780476.1	O-antigen ligase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 36039.37 Da
• Isoelectric Point: 5.5368

>NTDB_id=108348 AACH39_RS09635 WP_338619764.1 2017416..2018414(+) (pilA) [Paludibacterium sp. THUN1379]
MFSFFKKKSDTDVSEVEAAPREPSDTPAIPQRSWTERLKSGLAKTRDKLGKNLASLFGGGQIDEALYEELETVLLTADMG
VDATEHLLREVRARVSLRGLKDSSELKQTLKDVLYELIAPLEVPLDTSQGKPFVIMMAGVNGAGKTTSIGKLAKYFQNQN
KSVLLAAGDTFRAAAREQLMEWGERNNVTVITQQGGDSAAVCFDAINSAKARGIDIVLADTAGRLPTQLHLMEEIRKVKR
VIQKALPEAPQEVVLVLDANIGQNALNQVKVFDEALGLTGLILTKLDGTAKGGIIAAIAKQHPVPLRFIGVGEGLDDLRP
FSARDYIDALFD

Nucleotide

• Length: 999 bp

>NTDB_id=108348 AACH39_RS09635 WP_338619764.1 2017416..2018414(+) (pilA) [Paludibacterium sp. THUN1379]
ATGTTCAGTTTTTTCAAAAAGAAATCCGATACCGACGTCAGCGAAGTCGAAGCCGCTCCGCGCGAACCTTCCGACACGCC
GGCCATCCCTCAGCGCAGCTGGACCGAACGACTCAAGTCGGGCCTGGCCAAGACGCGTGACAAACTCGGCAAAAACCTCG
CCTCGCTCTTCGGTGGCGGACAGATCGACGAAGCGCTCTACGAAGAACTCGAGACCGTGCTGCTCACGGCCGACATGGGG
GTCGATGCCACCGAACACCTGCTGCGCGAGGTGCGCGCCCGTGTCTCTCTGCGCGGTCTGAAAGACAGCAGTGAACTCAA
ACAGACACTGAAAGACGTGCTGTATGAGCTGATCGCGCCGCTGGAAGTACCGCTCGACACCAGCCAGGGCAAGCCGTTCG
TCATCATGATGGCCGGGGTCAACGGCGCCGGCAAGACCACCTCCATCGGCAAACTGGCCAAGTACTTCCAGAATCAGAAC
AAATCCGTGTTGCTGGCTGCCGGCGACACCTTCCGTGCCGCGGCGCGCGAACAGCTGATGGAATGGGGCGAACGCAACAA
TGTGACCGTCATTACCCAGCAGGGTGGCGACTCCGCCGCCGTTTGCTTTGATGCCATCAACTCGGCCAAGGCCCGCGGCA
TCGATATCGTGCTGGCCGATACGGCCGGCCGCCTGCCGACTCAGCTGCACCTGATGGAAGAAATCCGCAAGGTCAAGCGC
GTCATCCAGAAGGCGCTGCCCGAGGCACCGCAGGAGGTCGTTCTGGTGCTGGATGCCAACATCGGCCAGAACGCCCTCAA
TCAGGTCAAGGTGTTTGACGAGGCGCTGGGGCTGACCGGCCTGATCCTGACCAAGCTAGACGGTACGGCCAAGGGCGGCA
TCATCGCCGCCATCGCCAAGCAGCACCCGGTTCCACTGCGCTTCATCGGCGTCGGTGAAGGTCTGGACGATCTGCGCCCC
TTCTCGGCCCGTGACTACATCGATGCACTGTTCGATTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (48-114)

• SRP54-type protein, GTPase domain (SRP54) (132-331)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	75	90.361	0.678