Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACLIN3_RS16960 Genome accession   NZ_CP176868
Coordinates   3796473..3797108 (-) Length   211 a.a.
NCBI ID   WP_104505301.1    Uniprot ID   A0AAE2U5F9
Organism   Pseudomonas orientalis strain MPB20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3791473..3802108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIN3_RS16925 (ACLIN3_16925) - 3791844..3792515 (+) 672 WP_124358863.1 Bax inhibitor-1/YccA family protein -
  ACLIN3_RS16930 (ACLIN3_16930) murB 3792587..3793606 (-) 1020 WP_191956463.1 UDP-N-acetylmuramate dehydrogenase -
  ACLIN3_RS16935 (ACLIN3_16935) - 3793603..3794067 (-) 465 WP_191951873.1 low molecular weight protein-tyrosine-phosphatase -
  ACLIN3_RS16940 (ACLIN3_16940) kdsB 3794067..3794831 (-) 765 WP_191956462.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLIN3_RS16945 (ACLIN3_16945) - 3794828..3795013 (-) 186 WP_003174668.1 Trm112 family protein -
  ACLIN3_RS16950 (ACLIN3_16950) lpxK 3795038..3796048 (-) 1011 WP_411565363.1 tetraacyldisaccharide 4'-kinase -
  ACLIN3_RS16955 (ACLIN3_16955) - 3796048..3796476 (-) 429 WP_181283805.1 ExbD/TolR family protein -
  ACLIN3_RS16960 (ACLIN3_16960) exbB 3796473..3797108 (-) 636 WP_104505301.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLIN3_RS16965 (ACLIN3_16965) comA 3797218..3799443 (-) 2226 WP_411565364.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLIN3_RS16970 (ACLIN3_16970) - 3799579..3800094 (+) 516 WP_124358869.1 DUF2062 domain-containing protein -
  ACLIN3_RS16975 (ACLIN3_16975) - 3800098..3801456 (-) 1359 WP_411565365.1 histidine kinase sensor domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22974.11 Da        Isoelectric Point: 6.8768

>NTDB_id=1083441 ACLIN3_RS16960 WP_104505301.1 3796473..3797108(-) (exbB) [Pseudomonas orientalis strain MPB20]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1083441 ACLIN3_RS16960 WP_104505301.1 3796473..3797108(-) (exbB) [Pseudomonas orientalis strain MPB20]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACTCCCGAACACCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAGCTCAAGGAGCTGCGTGCCAATTCTCCATTGGGTGAAATCCTTGCCGCCGGGCTTGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCGCGGGTAATCCATGAGTTGGAGCGCTACAT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTCGGTTTGCTGGGCACGGTGCTGGGTATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGCATGAGCACCAACGCCGCCGTGCTGGCCGGTGGCATCTCCAAGGCATTGATCACCACGGCC
GCGGGCCTGATGGTGGGTATCCCTTCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment